SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32310

Length: 555 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene32310
TATTGTTAGAATTATGAAAGCAAGGCGTGTTCTAGACCATAACAATATCGTGGCTGAGGTAGCCAAACAGCTACAATCGTCGTGACCTTGGCTGTCACTCATAATAAAGAAACGAATAGAGTCACTCATTGAACGGGAGTTCTTAGAAAGGGATAAGACGGACCGGAAATTGTACAGATATCTTGCTTGAGATATTGCTGAAGAATTTTACTTGTGATCTGGATAAATTTGTACATGTTAGCAGAGGGGCTTCCTCATTGCAGGTAATCATCTTAGTCACTGCAAGTTTGTTCTCAGTGATATAATTGTTGAATCTTTGTATCATGACATGATATGGGAGGCAAGGATATGGCAAAATTGTCATTTGCGGAAGAATTTATTTTTGTAAAATTCCTAAGACAAGGTGTATTGCTTAACCAGCCTTGTAATTTCATTTTCTCACAGCTGGAAAGATTACAGTATTTTATGTGGTTTCGTCATGTCATTGGATACCTTGGGTTTTGCTGCTATTTTAGGAAAACCAAAATGTACTGTGTCTGTTCTGTAGTCAACATT

Ace file of the UniGene sp_v2.0_unigene32310

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cullin 3B [Arabidopsis thaliana] sp\|Q9C9L0.1\|CUL3B_ARATH RecName: Full=Cullin-3B; Short=AtCUL3b gb\|AAG52544.1\|AC013289_11 putative cullin; 66460-68733 [Arabidopsis thaliana] gb\|AEE34961.1\| cullin 3B [Arabidopsis thaliana]	-	-	4.0e-17	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	cullin 3b	-	-	2.24996e-21	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	2.24996e-21	85%

Source	InterPros	Term	Type	Identity
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Cullin, conserved site	IPR016157	-	-
Sma3	Cullin homology	IPR016158	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNS8

Fln msg: your sequence is shorter than subject: 63 - 735

Fln protein: IVRIMKARRVLDHNNIVAEVAKQLQSS*PWLSLIIKKRIESLIEREFLERDKTDRKLYRYLA*

Protein Length: 64

Fln nts: TATTGTTAGAATTATGAAAGCAAGGCGTGTTCTAGACCATAACAATATCGTGGCTGAGGTAGCCAAACAGCTACAATCGTCGTGACCTTGGCTGTCACTCATAATAAAGAAACGAATAGAGTCACTCATTGAACGGGAGTTCTTAGAAAGGGATAAGACGGACCGGAAATTGTACAGATATCTTGCTTGA___GATATTGCTGAAGAATTTTACTTGTGATCTGGATAAATTTGTACATGTTAGCAGAGGGGCTTCCTCATTGCAGGTAATCATCTTAGTCACTGCAAGTTTGTTCTCAGTGATATAATTGTTGAATCTTTGTATCATGACATGATATGGGAGGCAAGGATATGGCAAAATTGTCATTTGCGGAAGAATTTATTTTTGTAAAATTCCTAAGACAAGGTGTATTGCTTAACCAGCCTTGTAATTTCATTTTCTCACAGCTGGAAAGATTACAGTATTTTATGTGGTTTCGTCATGTCATTGGATACCTTGGGTTTTGCTGCTATTTTAGGAAAACCAAAATGTACTGTGTCTGTTCTGTAGTCAACATT

Fln Alignment:

AllPineV4_c16981___IVRIMKARRVLDHNNIVAEVAKQLQSS*PWLSLIIKKRIESLIEREFLERDKTDRKLYRYLA
B8LNS8_______________IVRIMKARRVLDHNNIVAEVTKQLQSRFLPNPAVIKKRIESLIEREFLERDKTDRKLYRYLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain