SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32293

Length: 1064 nt

Origin of reads: Inia v1 Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene32293

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	21 kD protein n=1 Tax=Pinus radiata RepID=O65011_PINRA	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pectinesterase inhibitor	IPR006501	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPS0

Fln msg:

Fln protein: MGEALPGIRSQGRITMAFSATIFSVLVITACLGSAAATKALNPVHSNTHIVEYIRTSCKVTLYPQVCVSSLSSYAGSLKATQSNLVNAALQVSLVNANNVSLWATGLKRRGATMSKRERAALGDCIEDFGDTTDQIRQSLAELKKLRRNTFRFQMSNVETWISAALTNQDSCLDGFQVARGRVKAMVTGRVQNVCKLISNALALLNKFAATEGGY*

Protein Length: 217

Fln nts: ATTGGGTAGTTCCCCGCTCTATCGTTAAAGTCCCCTGACATTAATCAAAATATTATCAAATATAGCGCCATCGGCGGCAACGATCACGTGGAGCAGTCGAATATTGAACAATTCCCAACAGCGGTGCCGACTCCCTATTTATGGCATAACAGAGCAGAGG_-_ATGGGAGAAGCCCTTCCAGGCATACGGTCTCAGGGTCGAATCACCATGGCTTTCTCAGCCACTATTTTTTCTGTTCTTGTAATTACTGCGTGCCTGGGTTCAGCGGCAGCAACGAAGGCCCTGAATCCTGTGCACAGCAACACACACATTGTGGAATATATCAGAACTTCGTGCAAGGTGACTCTGTATCCGCAGGTCTGCGTTTCGTCGCTCTCTTCCTACGCGGGGTCTCTGAAGGCCACGCAGAGCAATCTGGTGAATGCGGCCTTGCAGGTGAGCCTCGTTAATGCCAACAACGTCTCCCTCTGGGCCACGGGTTTGAAGCGCAGAGGGGCTACGATGAGTAAAAGGGAAAGAGCGGCGCTCGGGGATTGTATTGAGGATTTCGGCGACACGACGGACCAGATTCGCCAATCTCTGGCGGAGCTGAAAAAGCTGAGGCGGAATACGTTCAGGTTTCAGATGAGCAACGTGGAGACGTGGATAAGCGCCGCCCTCACCAATCAGGACTCCTGCCTCGACGGCTTTCAGGTTGCCAGAGGGAGGGTTAAGGCCATGGTCACGGGCCGGGTGCAGAATGTGTGCAAATTGATCAGCAATGCCCTCGCTCTACTCAACAAATTCGCTGCCACCGAAGGAGGGTATTAG___ATCGGTGTCTGACAGTGACGGCCTGGAAGATCTTTTGATATGTTTTCAATATTCAACGTGCTCTGTATATGATAACTCTTTCATTTTTTGTTTTGTTTTCTATGGTTCTGGCATTAAAGCCAAATCTAGGGTTTTCTTGGGGTGTGCAGAGTATTCAGGAGGTTTCTGTAAGGAAAACGATCGGAGTTTCAGAGTCTGTTGGAGTTTTGAAGATGTTTTTTTCTTTGTAACACAATAAAATTCGACTTTTCTAAAA

Fln Alignment:

AllPineV4_c16952___MAFSATIFSVLVITACLGSAAATKALNPVHSNTHIVEYIRTSCKVTLYPQVCVSSLSSYAGSLKATQSNLVNAALQVSLVNANNVSLWATGLKRRGATMSKRERAALGDCIEDFGDTTDQIRQSLAELKKLRRNTFRFQMSNVETWISAALTNQDSCLDGFQVARGRVKAMVTGRVQNVCKLISNALALLNKFAATEGGY*IGV
A9NPS0_______________MASSATIFSVVVIAACLGSAAATKPLNPVHSNTHIVEFIKTSCNVTLYPQLCVSSLSSYAGSLKATQSNLVNVALQVSLVTARNVSVWAAGMKSRRALMSRRERAALGDCIEDFGDTADQIRQSLAELKKLRRNTFKFQMSNVETWMSAALTNEDSCLDGFQVAKGRVKAMVTGRVQKVCKMISNALALLNKFAATEGEYEIDV

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
471		66		33	0.997452
532	20	80			0.995493
535		80	20		0.995493
542		20		80	0.995493
632	87	12			0.992554
1070		25		75	0.99649

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain