SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32215

Length: 1301 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene32215 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-expansin 3, putative n=1 Tax=Ricinus communis RepID=B9RW20_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	beta-expansin 3 precursor	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	syncytium formation	GO:0006949	Biological Process	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3		IPR005132	-	-
Sma3	Major pollen allergen Lol pI	IPR005795	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9L6

Fln msg:

Fln protein: MMPTVSLQWTLVSNVCVDVIATCFVLLLLLSSEAVVGLDHTELDGDDMEWRPATATWYGSPDGDGSDGGACGYGSLVDQKPLRARVGAVSPVLFKGGEGCGACYKVKCMEKGLCSEKPVTVVITDECPGGYCAFGRTHFDLSGAAFGHMATNGKTSALLNSGELPVLYRRTLCEYPGKNITFHVTEGSTAYWFSILIEYEDGDGDVGAMHLKQAESDAWMEMRHVWGANWCLLGSDPLKAPFSVRVTTLTSKRTLSASNVIPEHWYPNATYKARLNFDD*

Protein Length: 281

Fln nts: ATGGGGACATTGGTTTGCCATTTTGGTTTATTTTTGTAGTTAGT_-_ATGATGCCAACTGTTAGCCTTCAATGGACCCTGGTGTCCAATGTCTGTGTGGATGTAATTGCAACTTGTTTTGTGTTGTTATTGTTGCTTTCTTCCGAGGCAGTGGTCGGTCTGGATCACACTGAGCTTGATGGGGATGATATGGAATGGCGCCCTGCTACAGCCACCTGGTATGGCAGTCCAGACGGTGATGGAAGTGATGGTGGCGCCTGCGGGTACGGCAGCCTTGTGGATCAGAAACCTCTGAGGGCGAGAGTTGGCGCTGTTAGCCCCGTTTTATTCAAAGGTGGAGAAGGATGTGGAGCGTGCTACAAGGTTAAGTGCATGGAGAAAGGATTATGCTCTGAGAAACCTGTAACTGTCGTCATTACTGATGAATGCCCAGGAGGATACTGTGCGTTCGGTAGAACACATTTTGATTTGAGTGGAGCTGCGTTTGGTCATATGGCCACAAATGGGAAAACCTCAGCGCTTCTCAACTCTGGAGAGCTCCCAGTTCTTTACAGACGCACATTGTGCGAATATCCGGGAAAGAACATAACTTTCCATGTCACCGAAGGCTCCACGGCCTATTGGTTCTCCATACTCATCGAATACGAAGACGGAGATGGCGATGTGGGAGCCATGCATCTAAAACAGGCGGAGTCAGATGCGTGGATGGAGATGAGGCATGTTTGGGGAGCCAACTGGTGCCTACTGGGAAGTGATCCACTGAAGGCACCGTTCTCTGTTCGAGTCACAACGCTGACAAGCAAACGAACGTTGTCTGCGAGTAACGTGATTCCCGAGCACTGGTATCCTAACGCCACTTACAAAGCACGCCTCAATTTCGACGACTAG___CCCAGGATCTGAGCTCCCCTGTTTCCTGATAATATTTTACTGTGCAATTGGCCATTTGATTGAATTCAAGGTATGTAAGAAAATAAGCCAAGAGCTTTTCCCACGTCTCTGAATCGTGCGCTTGTGTAGCGATGGAACTTCTGGAATCTGACCCCTCTGCAAGACGAAAAAATGTAGTTTATTTGTATGTCATGTATTATTGCTAACTGTGGCGGAGTTGGAATCATTACCTTGGTGAACACTAATTAAATGTGTATAGAGAGGTCCCCACAATTATATGTATATCTTTCTTGTAATCGTATTCACCTTTAACAATTAATCCACGATCTAGCATTTATATGGATTGGATTCATTGGAAGGCTGTTCAGTGTATTTTACTTATAGCCCTAGCGTTGAATAATGTTGAATAAGATCTTC

Fln Alignment:

AllPineV4_c16762___MMPTVSLQWTL-VSNVCVDVIATCFVXXXXXXS-EAVVGLDHTELDGDDMEWRPATATWYXXXXXXXXXXXXXXXXSLVDQKPLRARVGAVSPVLFKGGEGCGACYKVKCMEKGLCSEKPVTVVITDECPGGYCAFGR-THFDLSGAAFGHMATNGKTSALLNSGELPVLYRRTLCEYPGKNITFHVTEGSTAYWFSILIEYEDGDGDVGAMHLKQAESDAWMEMRHVWGANWCLLGSDPLKAPFSVRVTTLTSKRTLSASNVIPEHWYPNATYKARLNFD
D5A9L6_______________MMRTVSLQWPLLVSNVCVDVLATCFVLLLLFSCKEAAVALDHTELRGNAMEWRSAIATWYGSPDGDGSDGGACGYGTLVDQKPLRATVGAVSPVLFHGGEGCGACYKVKCMEKGLCSQKPVTVVITDVCGGGYSAFGGGTHFDLSGAAFGRMATHGKTPALLNSGELPVLYRRTFCKYPGKNISFHVTEGSTVYWFSILIEYEDGDGDVGAVHLKQVDSNAWMKMRHIWGVNWFLPGGAPLKAPFSVRVTTLTSKRTLSAMNVIPEHWYPNATYSARVKFD

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
176	12		87		0.992554
191	87	12			0.992554
207		87		12	0.992554
335	4			81	1.0
891		91		8	0.999766
1172	40		60		1.0
1185	66			33	1.0
1200	66		33		0.997452
1267	66		33		0.997452
1296	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain