SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32195

Length: 818 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene32195 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pathogenesis-related protein 10-3.3 n=2 Tax=Pinus monticola RepID=Q5YBE7_PINMO	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	pathogenesis-related protein 10- -like	-	-	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bet v I domain	IPR000916	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
450		88	11		0.991528
452	88	11			0.991528
456		11		88	0.991528
457		11		88	0.991528
458	11		88		0.991528
466			11	88	0.991528
467	11	88			0.991528
468	88	11			0.991528
475		12		87	0.992554
476		12	87		0.992554
478	14	85			0.993533
479		85		14	0.993533
519			12	87	0.992554
520	12			87	0.992554
521		87	12		0.992554
523		87	12		0.992554
524	12	87			0.992554
525		12		87	0.992554
526	12	87			0.992554
528		12		87	0.992554
530	12	87			0.992554
532			12	87	0.992554
533			12	87	0.992554
543			12	87	0.992554
744	90	10			0.999898
773	10	5	84		0.999846
806		8		75	0.99999
809		10		90	0.90298
810		10		90	0.90298
811	10		90		0.90298
816	10		90		0.90298
817		10		90	0.90298
820	9	72			0.999994
822		88	11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain