SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32180

Length: 371 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene32180
AACTCTGTTCATGTCCCCTCATGTTTCCTTGGAATTGTTTCAATTGGGGCGGTGGCAACCACTGTGAATCCGTTGTATACTGCCATGGAAGTGGCTAAACAGGTCCAGGATTCGAAATCCAAGCTCATCATAACTGTTCCAGAGCTCTGGGATAAAGTTAAGGATCTTGATTTGCCTACAATACTGATTGGGGGGAATGGAGATATTAAGAGGGCCAGTTCTCTCATTATTTCATTTTCTGAGGTCTTAACCATGGGTGCCCAAAGGAACCCACCGGAGGTTATTATCAAGCAAACAGACACAGCTGCACTGTTGTATTCTTCTGGGACTACTGGGGCCAACAAAGGGGTGGTGTTGACCCATAGGAATTT

Ace file of the UniGene sp_v2.0_unigene32180 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9SCH9_RICCO	-	-	1.0e-30	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	amp dependent	-	-	0.0	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Fatty-acyl-CoA synthase.	EC:2.3.1.86	-	0.0	68%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid biosynthesis	00061		0.0	68%
Blast2go	Metabolic pathways	01100		0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	68%
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	68%
Blast2go	fatty-acyl-CoA synthase activity	GO:0004321	Molecular Function	68%
Blast2go	peroxisome	GO:0005777	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNP4

Fln msg: Distance to subject end: 329 aas, your sequence is shorter than subject: 123 - 540

Fln protein: NSVHVPSCFLGIVSIGAVATTVNPLYTAMEVAKQVQDSKSKLIITVPELWDKVKDLDLPTILIGGNGDIKRASSLIISFSEVLTMGAQRNPPEVIIKQTDTAALLYSSGTTGANKGVVLTHRN

Protein Length: 124

Fln nts: AACTCTGTTCATGTCCCCTCATGTTTCCTTGGAATTGTTTCAATTGGGGCGGTGGCAACCACTGTGAATCCGTTGTATACTGCCATGGAAGTGGCTAAACAGGTCCAGGATTCGAAATCCAAGCTCATCATAACTGTTCCAGAGCTCTGGGATAAAGTTAAGGATCTTGATTTGCCTACAATACTGATTGGGGGGAATGGAGATATTAAGAGGGCCAGTTCTCTCATTATTTCATTTTCTGAGGTCTTAACCATGGGTGCCCAAAGGAACCCACCGGAGGTTATTATCAAGCAAACAGACACAGCTGCACTGTTGTATTCTTCTGGGACTACTGGGGCCAACAAAGGGGTGGTGTTGACCCATAGGAATTT

Fln Alignment:

AllPineV4_c16699___NSVHVPSCFLGIVSIGAVATTVNPLYTAMEVAKQVQDSKSKLIITVPELWDKVKDLDLPTILIGGNGDIKRASSLIISFSEVLTMGAQRNPPEVIIKQTDTAALLYSSGTTGANKGVVLTHRN
B8LNP4_______________NSIHVPPCFLGIVSIGAVATTVNPLYTAMELAKQVQDSQSKLIITVPELWDKAKDLGLPAIVIGRKGDSKRASSPTISFFEVLTMGAQKNPPEVIIEQTDTAALLYSSGTTGTNKGVVLTHRN

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
259	33		66		0.997452
283	33			66	0.997464
285		66		33	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain