SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32165

Length: 1078 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene32165

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J6_PINTA	-	-	1.0e-26	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	protein	-	-	6.94215e-34	47%

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
515			71	28	1.0
516	66	33			1.0
524		71		28	1.0
526	71		28		1.0
531	42		57		1.0
551	42			57	1.0
560	14		85		0.993533
576		28	71		1.0
578			71	28	1.0
579	42		28	28	1.0
581	42			57	1.0
601	71			28	1.0
634		40		60	1.0
648		60		40	1.0
655	80	20			0.995493
661			60	40	1.0
680	75			25	0.996473
687		25	75		0.996473
689		25		50	0.995533
708	50		50		1.0
711	33			66	0.997452
785	66		33		0.997459
858	75		25		0.996473
870	50		50		1.0
894		25	75		0.996473
895	50	50			1.0
896			75	25	0.996473
903		33	66		0.997452
934	33		66		0.997452
935	66	33			0.997452
945	66	33			0.997452
946	66			33	0.997452
955	33		66		0.997476
957		33	33	33	0.99775
961			33	66	0.997461
962		33	66		0.997452
970			66	33	0.997452
984	33		66		0.997452
985		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
888	901	GGA GGA GGA GGA GG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain