SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32122

Length: 998 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene32122

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I9_PINTA	-	-	3.0e-38	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	protein	-	-	0.0	55%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB91

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 190 aas, No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 231 - 482

Fln protein: MESLSDSLGNFTSLQHIDLSAC*HLQALPPSFGNLAMLQHIDLSYCEELQTLPASIGNLKQVQYINLSWCSNLQRLPQSFGDLTNLQRVSLCYCEKLKMLPDSMNLIRLKHLNLRGCRDLILTGQTLENVSTLESLDFSWCGKMEILPSQVTRQQFLEELILRDTNLKELPNDIGDLSNLEILDIWSPLLETLPHSLGKLMKLKKLTLYSRELKELPDSVGELRQLILCQ*

Protein Length: 232

Fln nts: ATAGTTGCCTATCTTCGTGGATTCCAACAAAGAATCTAAGAGTGTTGGAATTGGAATCCCTGGAATGGTGGTACACGGGTCGGTCCCTGGTGTTAGGAACCTTGTGGAACGCTGAATATGAGGTACCTGTTAAGTTGAGGGAATTGAATATAGGTATTGGCCTTTTCGAGTTACCAAAGTCCATAGGGCAGTTGAAGTACCTGCAAAGGATTGTTCTGTCCGACTTTAGAGGAACATTGCCTGAAGAGTTCTTTCATCTCTGCTTGTTGAAGCACTTAAGACTCGGGGGACTGTTAATGGAGTCGTTGTCAGACTCTTTGGGGAATTTCACAAGCCTCCAACATATTGACTTGTCTGCATGCTGACATTTGCAAGCGCTGCCGCCCTCATTTGGTAATTTAGCAATGCTCCAACATATTGACTTGTCATACTGCGAGGAATTGCAAACGCTGCCGGCTTCCATTGGAAATTTGAAACAGGTCCAATATATTAATTTGTCATGGTGCTCGAATTTGCAAAGGCTGCCGCAATCCTTTGGGGATTTAACAAATCTCCAAAGGGTTAGTCTGTGTTATTGCGAGAAGTTGAAAATGCTTCCAGACTCCATGAACTTGATTCGACTAAAACATCTCAATTTGAGGGGCTGCAGGGACTTGATCCTCACTGGTCAAACACTAGAGAATGTTAGCACGCTTGAAAGTTTAGACTTTTCTTGGTGTGGCAAAATGGAGATATTGCCTTCCCAAGTCACACGTCAGCAGTTCCTGGAAGAACTAATTTTGAGGGACACAAATTTAAAAGAATTGCCAAATGACATTGGAGATCTCAGCAATTTGGAAATTCTGGATATATGGAGCCCTTTGTTGGAAACCTTGCCGCATTCATTGGGTAAGCTAATGAAATTGAAGAAATTGACACTGTACTCGCGGGAATTGAAAGAATTGCCCGACTCGGTTGGTGAGTTGAGACAGCTGATACTaTGTCAATAGATGCTCCGA

Fln Alignment:

AllPineV4_c16551___MESLSDSLGNFTSLQHIDLSAC*HLQALPPSFGNLAMLQHIDLSYCEELQTLPASIGNLKQVQYINLSWCSNLQRLPQSFGDLTNLQRVSLCYCEKLKMLPDS----MNL---------------------IRLKHLNLRGCRDLILTGQTLENVSTLESLDFSWCGKMEILPSQVTRQQFLEELILRDTNLKELPNDIGDLSNLEILDIWSPLLETL-PHSXXXXXXXXXXXXYSRELKELPDSVGELRQL
D5AB91_______________LERLPDSFCNLTNLHHMDLSRCGKLERLPDSFGTLTNLHHIDLSNCGKLERLPDSFGSLTNLHHMNLVCCRKLKRLPDSLGNLTNLHHINLTLCRKLERLPDSFGSLMNLHHLDLSLCKKLERLPNSFGSCNRIKYLNSSCCSNLTISSDTLGNIRTLEHIDFSGCGKIELWPLQLAHQRSLKILKLTGTNIKELPSAIEVPTDLEVLWAGSPLLDTLYPLLGDLKNLKELRLKDCRELKCLPASVGRLSQL

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
641	25		50	25	0.995544
642	25		75		0.996473
643			75	25	0.996473
645		75		25	0.996473
651	25		75		0.996473
652	50		50		1.0
661	33	66			0.997452
667			66	33	0.997452
679	75			25	0.996473
680	25		75		0.996473
689	75	25			0.996473
703			50	50	1.0
708	75			25	0.996473
709		75	25		0.996473
716		25		50	0.995533
717			75	25	0.996473
719		33		66	0.997452
721			25	75	0.996473
722		33	66		0.997452
789	66		33		0.997458
813	66			33	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain