SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32120

Length: 694 nt

Origin of reads: Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene32120 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	receptor-like protein 12-like	-	-	59%

Source	InterPros	Term	Type	Identity
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
214	87			12	0.992554
217	87		12		0.992554
234		37		62	1.0
236	75		25		1.0
240	50	50			1.0
249		37		62	1.0
262			66	33	1.0
274	71		28		1.0
278		50		50	1.0
288	33	66			1.0
331	66		33		1.0
336		85		14	0.993533
337		85	14		0.993533
339	87		12		0.992554
341	87			12	0.992554
343			87	12	0.992554
345	87	12			0.992554
346		12		87	0.992554
347	12			87	0.992554
366		71		28	1.0
367	28	42	28		1.0
370	85		14		0.993533
371			28	71	1.0
374	71	28			1.0
378			28	71	1.0
380		28	71		1.0
382	71	28			1.0
383	71		28		1.0
387		28		71	1.0
410	80		20		0.995493
419	25		75		0.996473
434		25		75	0.996473
447		80		20	0.995493
455	20		80		0.995493
494			20	80	0.995495
496			20	80	0.995495
497	20			80	0.995495
498		20		80	0.995495
499	20		80		0.995493
506			16	83	0.994512
507		83		16	0.994512
510	83	16			0.994512
511		83	16		0.994512
514		83	16		0.994512
517		80		20	0.995493
522		80		20	0.995493
576			50	50	1.0
595		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain