SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32089

Length: 933 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene32089

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peptidase-S24/S26 domain-containing protein [Arabidopsis thaliana] gb\|AAS47614.1\| At1g53530 [Arabidopsis thaliana] gb\|AAS76728.1\| At1g53530 [Arabidopsis thaliana] dbj\|BAF01030.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE32952.1\| peptidase-S24/S26	-	-	1.0e-39	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	mitochondrial inner membrane protease subunit 1	-	-	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S26A, signal peptidase I	IPR000223	-	-
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Heat shock protein Hsp20	IPR002068	-	-
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Peptidase S26A, signal peptidase I, lysine active site	IPR019757	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
281		87		12	0.992554
309	85		14		0.993533
341			85	14	0.993533
413	25		75		0.996473
498			20	80	0.995493
621	66	33			0.997452
622		66	33		0.997452
627	66	33			0.997453
628	66	33			0.997454
630		66		33	0.997452
631		66	33		0.997452
633	66	33			0.997452
634	66			33	0.997452
637	66			33	0.997452
638		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain