SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32088

Length: 1742 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene32088 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-galactosidase n=1 Tax=Phaseolus vulgaris RepID=Q41100_PHAVU	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	alpha galactosidase	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	79%
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	79%
Blast2go	catalytic activity	GO:0003824	Molecular Function	79%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Glycoside hydrolase, family 27	IPR002241	-	-
Sma3	Glycoside hydrolase, clan GH-D	IPR000111	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWJ8

Fln msg:

Fln protein: MDFRYGCFIYAVLLALICSAVTCNAENTTLGRRLLQNGLGQTPPMGWNSWNHYGCNINENIIRETADALVSNGLSKLGYIYVNIDDCWAEPNRDQNGRLVASASKFPSGIKALADYVHSKGLKLGIYSDAGYYTCQKQPGSLGHEQVDADTFAYWGVDYLKYDNCYNDGSKPESRYPKMHDALLRTRWPIFFSLCEWGLDAPATWARQIGSSWRTTQDIEDKWESIVSRADQNNEYASFAGPGGWNDPDMLEVGNGHMTAEEYVSHFSIWALMKAPLLIGCDVTSIDKKTYGILSNSEVIAVNQDPLGVQGKKVSKQVDLEVWAGPLSNNRVAVVLWNKSNSRATITAKWEDIGLNPSAVVRVRNLWRHRELEANHEGSLTASVKPHGCRMYVLTSVSR*

Protein Length: 401

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTATTACTAATCATATCTAATCATATCGGCCCTGCATAAAGCTTAAAAGGTTAAAGTTCTAACGGAATACAGCAAGCATCCTCTGGCTATAAATCTGTTCTCGTACCATTGCCATTATTCATTCCTACCTTCCTAGCTGGGAAACC_-_ATGGATTTTCGATATGGCTGTTTCATATATGCCGTGCTCTTGGCCTTGATATGTTCTGCGGTGACCTGTAATGCTGAGAATACAACTTTAGGACGGCGTTTGCTTCAGAATGGCCTTGGGCAGACCCCTCCTATGGGGTGGAATAGCTGGAATCACTACGGCTGCAACATCAATGAGAATATTATACGAGAAACAGCTGATGCTTTGGTATCAAATGGTCTCTCTAAGTTGGGGTATATCTATGTAAATATAGATGATTGCTGGGCAGAGCCTAATCGTGATCAAAATGGGAGATTGGTTGCAAGCGCTTCAAAGTTTCCCTCTGGTATCAAGGCTCTTGCTGATTACGTGCACAGCAAGGGCCTCAAACTGGGAATATATTCAGATGCTGGGTACTATACCTGTCAAAAGCAGCCAGGTTCCTTGGGACATGAGCAAGTAGATGCCGATACGTTTGCTTATTGGGGCGTAGATTATCTCAAGTATGATAACTGTTACAATGATGGCTCTAAGCCTGAAAGCCGGTACCCAAAGATGCATGATGCACTTTTGAGAACCCGGTGGCCAATATTCTTTTCCCTGTGTGAATGGGGATTGGATGCTCCGGCCACCTGGGCTCGGCAAATTGGAAGCAGTTGGAGAACAACACAAGACATTGAGGACAAGTGGGAAAGCATCGTATCCCGTGCAGATCAAAACAATGAATATGCAAGCTTTGCTGGTCCAGGTGGATGGAATGATCCAGATATGTTGGAAGTCGGAAATGGCCACATGACGGCTGAGGAATATGTTTCACATTTCAGCATCTGGGCTCTGATGAAGGCACCACTATTGATTGGATGTGATGTAACATCTATCGACAAGAAGACTTACGGAATCCTAAGTAACTCTGAGGTTATTGCAGTCAATCAAGATCCTTTGGGAGTACAAGGGAAAAAAGTGAGCAAGCAAGTGGACCTCGAGGTATGGGCAGGTCCTTTATCTAACAACCGTGTAGCTGTGGTTCTATGGAATAAAAGCAACTCAAGAGCTACAATCACTGCCAAATGGGAAGATATTGGATTGAATCCCTCAGCTGTTGTCAGGGTTAGAAACTTATGGAGGCACAGAGAATTGGAAGCAAATCACGAAGGCAGTCTCACAGCCTCAGTGAAGCCTCATGGATGTAGGATGTATGTTTTAACCAGCGTTTCTCGCTAG___TGACCATCCAAACTAATGATTGCCAAAACTTTCTTTTTTCCGTCTAGCCTACGTTCTGATAATTGGTGTGTGATGCTTCTCAAAAAAGAGACACCACTCTCCATTTTCTTAATTAATAATTTAAATAAGAAAGTTAAAATGTACAGGTTTCTCTATTTTTCTCTTTTTCTACATCTGGTTGAAAAAGAGCAAGTTATTGTTAATTAGTGATATTGTTATGGTCATCAAAATAGTGGCCTAAATTACTGTTACTGCTTGATGAGCTTAGGAATATTTTTTGAAGATACTCGTGGACGAGCTTAAGAATATTGTGTTGTATTGCTGAATTGCAATGTCAAAATATATTTTCATGTTGAATTGCAATGTCAAAA

Fln Alignment:

AllPineV4_c16489___MDFRYGCFIYAVLLALICSAVTCNAENXXXXXXXXXXXXXXTPPMGWNSWNHYGCNINENIIRETADALVSNGLSKLGYIYVNIDDCWAEPNRDQNGRLVASASKFPSGIKALADYVHSKGLKLGIYSDAGYYTCQKQPGSLGHEQVDADTFAYWGVDYLKYDNCYNDGSKPESRYPKMHDALLRTRWPIFFSLCEWGLDAPATWARQIGSSWRTTQDIEDKWESIVSRADQNNEYASFAGPGGWNDPDMLEVGNGHMTAEEYVSHFSIWALMKAPLLIGCDVTSIDKKTYGILSNSEVIAVNQDPLGVQGKKVSKQVDLEVWAGPLSNNRVAVVLWNKSNSRATITAKWEDIGLNPSAVVRVRNLWRHRELEANHEGSLTASVKPHGCRMYVLTSVS
A9NWJ8_______________MDFQYGCFVHAVLLAFACCAVTCGAQNTTSGRSLLQSGLAQTPPLGWNSWNHFGCHINEDVIRETADALVSTGLSKLGYQYVNIDDCWAELNRDSNGRLVASASRFPSGIKALADYVHSKGLKLGIYSDAGYYTCQKQPGSLGHEQVDADTFAYWGVDYLKYDNCYNDGSKPENRYPKMRDALLSTRRPIFYSLCEWGLDVPATWARQIGSSWRTTDDIEDKWESMISRADQNNEFAQYAGPGGWNDPDMLEVGNGNMTPEEYGSHFSIWALMKAPLLIGCDVTSMDKKTYGILSNSEVIAVNQDPLGVQGKKVNKLGDLEVWAGPLSNNRVAVVLLNRSNSRTIITAKWEDIGLNPSAVVRVRNLWRHRELEANHQGSLTASVKPHGCKMYVLTSVS

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
66		33		66	0.997452
118	66	33			0.997452
172	50			50	1.0
202			50	50	1.0
224			33	66	1.0
231		40	60		1.0
244			25	75	0.996473
621		16		83	0.994512
707	85		14		0.999981
921	86		13		0.999973
1246	15		84		1.0
1320	88			11	0.991528
1341	85			14	0.993533
1524		40	60		1.0
1623		25	75		0.996473
1624		25	75		0.996473
1625		25		75	0.996479
1627		75		25	0.996473
1641	20			80	0.995497
1642	80			20	0.995497
1644		80		20	0.995497

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain