SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32077

Length: 864 nt

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene32077

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	copia-type polyprotein	-	-	59%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
334	33		66		0.997476
337	33		66		0.997452
360			66	33	0.997452
365		66		33	0.997452
372		66		33	0.997452
384	25	75			0.996473
385		75		25	0.996473
419	33	66			0.997452
442	33		66		0.997452
464	33	66			0.997452
471			33	66	0.997452
488		66		33	0.997452
496		66		33	0.997452
497	66		33		0.997452
519		66		33	0.997452
520	66			33	0.997454
523			66	33	0.997452
529	66		33		0.997452
538	66		33		0.997452
539			33	66	0.997452
556	33		66		0.997452
565		66		33	0.997452
567	66		33		0.997452
570		33		66	0.997452
571	66		33		0.997452
573		66		33	0.997452
590		33		33	0.997753
592		66		33	0.997452
596	33		66		0.997452
604	66		33		0.997452
615	66		33		0.997452
620		66		33	0.997452
633	33		66		0.997467
634	33		66		0.997461

SSRs (tot: 1)

Start position	End position	Sequence	Length
320	337	GGGCAG GGGCAG GGGCAG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain