SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32026

Length: 403 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene32026
CGCAAGTGTACAAGTTTTCGACTGCAGAAATGAATAAAGAGCATGAGAAGGAGCTGGACGAGGACGCCTTGCCGTTGTTACCTTGGCTGTCGTCAATTCCGGGAAATCGCCTGGGCAGATTGGTGCAGGTGACAATGCGGACGAGTCGATCGTGTATGAAGAGCGGGAGATCAGTAACACGGTGGCGTCTGTGCTGGAAATCGCAAAGAACAACAGATATCACATGTTTTTGGTAGGGAGGGGTCGTTTCCCGTCCCCTTTGGTGGCAGACTTGGCGGATCGGACTGCAGAGTGTCCGGAATTGGGTCCAATTGGAGATCTACTCACGTCTTCCACCGTTCCAATCACCGCATCAGTATTGGTGATTCAGCAACACGATGTCATTCATAAGGATGAGGTAGCC

Ace file of the UniGene sp_v2.0_unigene32026

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATCHX20; monovalent cation:proton antiporter , putative [Medicago truncatula]	-	-	6.0e-18	53%
FL-Next	sp=Cation/H(+) antiporter 20; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%
Blast2go	k(+) h(+) antiporter	-	-	9.90952e-21	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	water homeostasis	GO:0030104	Biological Process	9.90952e-21	69%
Blast2go	cellular potassium ion homeostasis	GO:0030007	Biological Process	9.90952e-21	69%
Blast2go	endomembrane system	GO:0012505	Cellular Component	9.90952e-21	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cation/H+ exchanger	IPR006153	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M353

Fln msg: Separated hits, possible frame ERROR between 71 and 143, Distance to subject end: 18 aas, your sequence is shorter than subject: 134 - 842

Fln protein: QVYKFSTAEMNKEHEKELDEDAxxxxxxxxxxxxxxxxxxxxxxxxxESIVYEEREISNTVASVLEIAKNNRYHMFLVGRGRFPSPLVADLADRTAECPELGPIGDLLTSSTVPITASVLVIQQHDVIHKDEVA

Protein Length: 135

Fln nts: CGCAAGTGTACAAGTTTTCGACTGCAGAAATGAATAAAGAGCATGAGAAGGAGCTGGACGAGGACGCCTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGAGTCGATCGTGTATGAAGAGCGGGAGATCAGTAACACGGTGGCGTCTGTGCTGGAAATCGCAAAGAACAACAGATATCACATGTTTTTGGTAGGGAGGGGTCGTTTCCCGTCCCCTTTGGTGGCAGACTTGGCGGATCGGACTGCAGAGTGTCCGGAATTGGGTCCAATTGGAGATCTACTCACGTCTTCCACCGTTCCAATCACCGCATCAGTATTGGTGATTCAGCAACACGATGTCATTCATAAGGATGAGGTAGCC

Fln Alignment:

AllPineV4_c16330___YKFSTAEMNKEHEKELDEDALxxxxxxxxxxxxxxxxxxxxxxxxESIVYEEREISNTVASVLEIAKNNRYHMFLVGRGRFPSPLVADLADRTAECPELGPIGDLLTSSTVPITASVLVIQQHDVIHKDEV
Q9M353_______________YAFLTTNVDPEKEKELDEGALxxxxxxxxxxxxxxxxxxxxxxxxEMVEYKEKEPNNIIEEILSIGQSKDFDLIVVGRGRIPSAEVAALAERQAEHPELGPIGDVLASSINHIIPSILVVQQHNKAHVEDI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain