SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene31848

Length: 432 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene31848
TTTCTATGGCGGCGACCAATATAAATATCGGCGGTAATGACTTCAGATTCCTGCCCTTTTCCTCTGGTAGAAGGAGGTGCCCAGCTGCGAACATGGCGTACGTTAAGATGCAACACGCCGTGGCGCTTCTTGCGCAGGCGTTCGACTGGTCACTTCCAGAGGGCCAGGTGGATGTTAACATGGAGGAAGGATTTGGAATTACTAGCCCCATGAAGTTCCCGTTACTTGCACTCGCCACACCTCGACCACGTCATGGGGCTCACAATGGTGGCAATGTACAGTGAATGCTTTTGGCTTAGAGGTGTCATGCCATGAGAGGCCATGAAGTGAGGTAGTTAGGTGGCTGGGTATTGTTTATTGCGTTAAATGTATTGTAATGGTATTTGCAATGTCTTGTAGCACTGTGTGGTCATAGTCAAATGCAACATCATT

Ace file of the UniGene sp_v2.0_unigene31848 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Flavonoid 3',5'-hydroxylase n=2 Tax=Clitoria ternatea RepID=A4F1R0_CLITE	-	-	8.0e-14	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	flavonoid 3 -hydroxylase	-	-	4.27921e-31	68%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ07

Fln msg: your sequence is shorter than subject: 94 - 549

Fln protein: SMAATNINIGGNDFRFLPFSSGRRRCPAANMAYVKMQHAVALLAQAFDWSLPEGQVDVNMEEGFGITSPMKFPLLALATPRPRHGAHNGGNVQ*

Protein Length: 95

Fln nts: TTTCTATGGCGGCGACCAATATAAATATCGGCGGTAATGACTTCAGATTCCTGCCCTTTTCCTCTGGTAGAAGGAGGTGCCCAGCTGCGAACATGGCGTACGTTAAGATGCAACACGCCGTGGCGCTTCTTGCGCAGGCGTTCGACTGGTCACTTCCAGAGGGCCAGGTGGATGTTAACATGGAGGAAGGATTTGGAATTACTAGCCCCATGAAGTTCCCGTTACTTGCACTCGCCACACCTCGACCACGTCATGGGGCTCACAATGGTGGCAATGTACAGTGA___ATGCTTTTGGCTTAGAGGTGTCATGCCATGAGAGGCCATGAAGTGAGGTAGTTAGGTGGCTGGGTATTGTTTATTGCGTTAAATGTATTGTAATGGTATTTGCAATGTCTTGTAGCACTGTGTGGTCATAGTCAAATGCAACATCATT

Fln Alignment:

AllPineV4_c15953___GGNDFRFLPFSSGRRRCPAANMAYVKMQHAVALLAQAFDWSLPEGQVDVNME-EGFGITSPMKFPLLALATPR
C0PQ07_______________GNNDFRYLPFSAGRRKCPAGNLAYVTMEHAIAVLVQAFDWSLPEGQLNINMEDEEFGASSAKKYPLLALAKPR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain