SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene31396

Length: 1043 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene31396

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TRAUCO n=1 Tax=Pinus radiata RepID=B3V288_PINRA	-	-	78%
FL-Next	tr=TRAUCO; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	81%
Blast2go	set1 ash2 histone methyltransferase complex subunit ash2-like	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	75%
Blast2go	simple leaf morphogenesis	GO:0060776	Biological Process	75%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	75%
Blast2go	histone methylation	GO:0016571	Biological Process	75%
Blast2go	chromatin DNA binding	GO:0031490	Molecular Function	75%
Blast2go	Set1C/COMPASS complex	GO:0048188	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	B30.2/SPRY domain	IPR001870	-	-
Sma3	SPla/RYanodine receptor SPRY	IPR003877	-	-
Sma3	SPla/RYanodine receptor subgroup	IPR018355	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B3V288

Fln msg: your sequence is shorter than subject: 299 - 412

Fln protein: WGRNTNAQTRSASASKKSGKKNMVNVNPAAKDTTLITPAPRLLDDEDEDDNPNMRICLSKIHKAEKIELSKDRLIAGSSKGYRTVRATRGVVEGAWYFEIKVVYLGETGHTRLGWSTEKGDVQAPVGYDGNSYGYRDVDGTKLHNAIREPYGNGPYVEGDVIGFYINLPNGSEYAPKPLQYVWYRGQLHYFNAVEEALKVVPGSEILFFVNGICQGVAFKDINGGRYYPAASIYTLPNQPNCTVQFNFGPEFDCFPEDFGNRPIPKAMCEASYCGIDGQAVHHGETLVENGQSSEKKA*

Protein Length: 300

Fln nts: ATGGGGGAGAAACACTAATGCCCAGACCAGATCAGCATCAGCATCCAAGAAGTCAGGTAAGAAGAACATGGTTAATGTCAATCCCGCAGCAAAAGATACTACTCTCATAACTCCCGCCCCCAGGCTGCTTGATGATGAGGATGAGGATGACAACCCAAACATGAGGATTTGTCTGTCAAAGATCCACAAGGCAGAAAAGATTGAGCTGAGTAAAGATAGACTGATTGCAGGGAGTTCTAAAGGATACAGAACTGTGAGGGCTACTAGGGGTGTGGTGGAGGGGGCATGGTATTTCGAGATCAAGGTTGTTTACCTCGGTGAAACTGGGCATACCAGATTGGGATGGTCTACAGAGAAAGGAGATGTTCAGGCTCCTGTAGGCTATGATGGGAATAGCTATGGCTACAGGGATGTGGATGGCACTAAACTTCATAATGCTATCAGAGAGCCCTATGGTAACGGACCTTACGTGGAGGGTGACGTTATTGGGTTTTATATTAATTTGCCCAATGGCAGTGAATATGCGCCGAAGCCACTGCAGTATGTGTGGTATAGAGGTCAGCTTCATTACTTCAACGCAGTAGAGGAAGCACTAAAGGTGGTGCCTGGAAGTGAGATATTATTCTTTGTAAATGGGATATGTCAAGGTGTTGCTTTCAAGGATATAAATGGTGGCAGATATTACCCTGCAGCTTCTATTTACACCCTTCCAAATCAACCTAACTGTACAGTGCAGTTTAATTTTGGGCCAGAATTTGATTGCTTTCCTGAGGACTTTGGCAATCGACCCATTCCCAAGGCCATGTGTGAGGCTTCTTATTGTGGAATTGACGGGCAAGCAGTCCACCATGGAGAAACTCTTGTTGAAAATGGTCAATCTTCAGAAAAGAAAGCTTGA___TTTTTTTGGTATATTTTTTCATTTTAGAACTGAGACAGTATACATTTGCTGTTGGTAGTGCTTACCTTTGCGTAAAATCTTGATCTGTGGGATGCAGTGGTGGCAATTCTTTTATGACATTCTAGGTTTCTTAATAATTAATAGG

Fln Alignment:

AllPineV4_c14996___RNTNAQTRXXXXXXXXXXXNMVNVNPAAKDTTLITPAPRXXXXXXXXXNPNMRICLSKIHKAEKIELSKDRLIAGSSKGYRTVRATRGVVEGAWYFEIKVVYLGETGHTRLGWSTEKGDVQAPVGYDGNSYGYRDVDGTKLHNAIREPYGNGPYVEGDVIGFYINLPNGSEYAPKPLQYVWYRGQL--HYFNAVEEALKVVPGSEILFFVNGICQGVAFKDINGGRYYPAASIYTLPNQPNCTVQFNFGPEFDCFPEDFGNRPIPKAMCEASYCGIDGQAVHHGETLVENGQSSEKK
B3V288_______________RNTNASRKSGKK-------NMVNVNPAAKDTTLITPAPRLLDDEDKDDNPNMRICLSKIHKAKKIELSKDRLIAASTKGYRTVRATRGVVEGAWYFEINVVYLGKTGHTRLGWSTEKGDVDAPVGYDGNSYAYRDVDGNKVHKAISEPYGDGPYVEGDVIGFYINLPNGSE----------YEGQLHDHHSNAVDAAPEVVHGSEISFFINGICQGVAFKDINGGRYYPAASFYTLPNQPNCQVQFNFGPEFDCFPEDFGNRPLPKAMSEASYCGIDRQAVNHGELLVESGQSSEKK

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
308		66		33	0.997975
747	87	12			0.992554
748	87		12		0.992554
750		12		87	0.992554
751			12	87	0.992554
754	12		87		0.992554
755		12	87		0.992554
757		87		12	0.992554
758	87			12	0.992554
760	87		12		0.992554
761	86	13			0.999973
769		13	86		0.999973
842	16		83		0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain