SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene31201

Length: 507 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene31201
ATGTGATACTCCTAACGGTGATGATCCTCATCCTAATTATAATTGTGCTCGTGGCAATATTTCAGGTTCTATCCCTTTTGAAATTGGAAATTGCAGTGATCTCTTTTTTCTATCTCTTTATTCAAATATGCTCACAGGGCCCATACCTGAAACCATTACAAGATTGAAGAAGCTTAGAGTTCTTGACCTCAATACCAACCAGATCACGGGTACAATTCCTCAGGAAATAGGAAAGCTCCAATCCCTTGAATCCTTGCTTTTATTTTCAAACAACTTAACCGGACATATTCCAGATAAGATAGGTCACTTAAAATTTCTTCAATACCTAGAATTGAGTAGGAATAATATGTCAGGCAATATCCCCTTTCATATTAGTGGATTGACTTCACTCGAATATTTGATTTTATCACACAACAACTTCACTGGGAACATTCCTGAAGCCATAGGAAATCTCAAAGCTTTAAGGACCATAGATATGTCCAATAATAATATCAGTGGGTGCATTCC

Ace file of the UniGene sp_v2.0_unigene31201

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[S] COG4886 Leucine-rich repeat (LRR) protein	-	-	4.0e-10	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	lrr receptor-like serine threonine-protein kinase rch1-like	-	-	3.60924e-30	64%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Guanine-nucleotide dissociation stimulator CDC25	IPR001895	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF1618	IPR011676	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 231 aas, your sequence is shorter than subject: 168 - 818

Fln protein: CDTPNGDDPHPNYNCARGNISGSIPFEIGNCSDLFFLSLYSNMLTGPIPETITRLKKLRVLDLNTNQITGTIPQEIGKLQSLESLLLFSNNLTGHIPDKIGHLKFLQYLELSRNNMSGNIPFHISGLTSLEYLILSHNNFTGNIPEAIGNLKALRTIDMSNNNISGCI

Protein Length: 169

Fln nts: ATGTGATACTCCTAACGGTGATGATCCTCATCCTAATTATAATTGTGCTCGTGGCAATATTTCAGGTTCTATCCCTTTTGAAATTGGAAATTGCAGTGATCTCTTTTTTCTATCTCTTTATTCAAATATGCTCACAGGGCCCATACCTGAAACCATTACAAGATTGAAGAAGCTTAGAGTTCTTGACCTCAATACCAACCAGATCACGGGTACAATTCCTCAGGAAATAGGAAAGCTCCAATCCCTTGAATCCTTGCTTTTATTTTCAAACAACTTAACCGGACATATTCCAGATAAGATAGGTCACTTAAAATTTCTTCAATACCTAGAATTGAGTAGGAATAATATGTCAGGCAATATCCCCTTTCATATTAGTGGATTGACTTCACTCGAATATTTGATTTTATCACACAACAACTTCACTGGGAACATTCCTGAAGCCATAGGAAATCTCAAAGCTTTAAGGACCATAGATATGTCCAATAATAATATCAGTGGGTGCATTCC

Fln Alignment:

AllPineV4_c14525___PHPNYNCARGNISGSIPFEIGNCSDLFFLSLYSNMLTGPIPETITRLKKLRVLDLNTNQITGTIPQEIGKXXXXXXXXXXXXXXTGHIPDKIGHLKFLQYLELSRNNMSGNIPFHISGLTSLEYLILSHNNFTGNIPEAIGNLKALRTIDMSNNNISGCI
B8LQX6_______________PLSTLSLGKNYLTGSIPEAIGNLSQLTSLSLHQNNFTGGIPEAIGNLIQLTSLILNQNNFTGGIPEAIGNLSQLTSLTLNQNNFTGGIPEVIDNFSQLQLLDLSKNGFTGQIPGYLASLQELRVLSVAYNKLHGDIPASITNLTQLQVLDLSNNRISGRI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain