SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene31098

Length: 661 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene31098

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase Xa21 [Oryza sativa Japonica Group]	-	-	4.0e-35	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	kinase-like protein	-	-	1.21256e-39	72%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
279		33		66	0.997452
319			50	50	1.0
328	75		25		0.996474
329		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain