SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene31081

Length: 3076 nt

Origin of reads: Inia v1 Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene31081
TACTATTGGGGGTCCTCAACTGAAATGGGGACTGAACCCACAGCCTGTATTGACTCATTAGTGACAACTATGCCTTCAAGATTAATTTTTGTGTTAATACAGGTTTTGGGGTTGTTTCTTGAACCCTTGAGAGGGGAGGTTTATGTTGTATTGATGAGAGATGAACCTGTGGTCTCTTACAAGGGTTCAATTCCAGGATATCCTGCTACTGGATCGTTCTCAGGCATCAAGGTTGATGTCACCAGCCAATATGTAGAGTTATACCGGAACTATTTGATCAAAAGCCACAATATGGTACTCCAGAATACTCTCCAAAAGGGCACATACAGTAAATTGTATAGTTATCATCACCTTGTCAATGGTTTTGCTGTGGAGACTAATTCGGCTGAGGCAGCAGAACGCTTGGCAGTGGCAGAAGGGGTAAGGTGCATTCAGAAAGACAGAAAGATTGAAAAACTGACCACCCACACCCCTGATTTCCTAGGTATTTCCTCTCATGTGTGGCCTCTACTCGGTGGTGCTCGGAACTCAGGGGAAGGAGTGGTGATTGGGATGATTGACAGTGGTATCGACCCCATTCATCCGAGCTTCTCCAACTCTCAGTTTAGTGAAGGAGCACTTTCCAGGGGACGCCATAATCCCAAAAACAGACACAGGAATTACACTGGTAAATGCGAGATGGCCAAAGAATTCCCAAAAGGTTCTTGCAATGGGAAGATCATAGGTGCACAGCATTTTGATTTATCAATAAAAGCAGCAGGCCAATTCAATGTTACAGCAGATTCTGCTTCTCCTTTCGATACCGGTGGCCATGGAAGCCATACAGCCTCAACTGCCGCTGGAAATCATGGAGTTCCCGTGACTGTAAATGGTTTCAACTACGGATTTGCAAGTGGCATGGCACCTGGTGCTCGGATTGCGGTCTATAAAGCGATTTATTCCATGGGAGGATACTTGGCAGATGTGGTAGCTGCAATTGATCAGGCAGTAGAGGACGGAGTAGACATACTGAGCCTGTCAATAGGTCCATCAAGTATTAGCTCGGATGTTTCAGCATTTTTGGATGTCCTGGACGTTGAGCTCCTTTACGCGGTAAAAGCAGGTGTTTTCGTTGTTCAAGCAGGTGGTAATAACGGGCCCGTTGCCAGCAGTGTGCTGTCCTTCAGTCCATGGATCTCCACAGTCGCTGCTTCGCTCACAGACAGAACATATAACAACTTCGTTGAACTAGGCAATGGGCAAAAATATGCTGGGCTTGGTCTTTCTCCTCCCACTAAAGGAGAATCAGAATATTACAGAATGGTGACTGCCATGGACGCCTTTGACAAGAACAGTTCTTACAGCGGAGTGAATACTTGCCAGTATCCGGAAGCCTTCATCAAGAAAGTAGTTGAGGGGAACATTTTAATCTGCAGCTATACTATTGACTTCGACCTGGAAGTGGCCAGCATAACGACAGTTTCAGACACTGCTCAGAAATTGGGTGCCGCAGGATTTGTGATGACAGTAGATCCCACTTTTGGATCGCTGTCTTTTAGGAGCGGCCCTGCTATTTTTACAAGCCCTGGGACAATTGTCCTGGACGAGCAGTCTTCTTTGAACCTGTTGACGTATTACAGTAACAATACCAGGCGCGATGCAAGTGGCTCCGTCGTAGAATTTGGAGCAACAGCTAGAATTGGGGATGGGCGAGTTGCGGCATACAGTGGCGAGGGCCCAACGGTTGCTTCCTATTCTTCTCGAGGACCTGATCTCAACAATAAAGCTGGGCAATTTGCTGATGTCCTCAAACCAAATATAATGGCTCCCGGCCACCTTATATGGGCTGCTTGGAGCCCAACCAGCGTTGATGACAAAGTCTTCCGAGAGCAGAACTTCGCAATGGTCTCAGGCACCAGTATGGCGACACCCCATGTGGCAGGAGTCGCAGCGATGATCAAACAGAATCATCCGGATTGGAGTTCAGCTGCTATTTCTTCCGCTATGATGACGACTGCATCAACGGCAGATCGCTTTGGAAAACCGATTCTTGCACAGAGTCCGTGGGGAAATATATCTGCCCAGTTGGGGAATCTCGCCGGGGCTGCCACCCAGTTCGATTATGGTGCAGGTCTCATCAATCCTGCAAGGGCTATGGATCCGGGCCTCGTTTTTGATGCGGATTTTGATGATTATATGAGTTTCTTATGCTCTCTCCCTGGAGTGGACGAGGCCTCTGTGCGTGAGGCAACAGGAATGGGATGCTCATCAAGAATGACTTGGGCCTCAGATCTGAATACTGCTTCAATCACAGTCGGGAATCTTATGGGCTCTAGGAAAGTGCATCGCGTGGTGAAGAATGTAGCTGCAGATTATTCAAAAGAGGTGTACGAGGCCAACATTACAGACCCAGAGGGTGTGAAGGTCAAAGTAAAGCCTCGTAAATTCACCATACACAAGGGCTCATCTAAATCGTTATTGGTGACCTTAAAAGTGAAGGTGGCTACAGGCACGTTTGTATTTGGAGAGATTGTGTTGACTGGTAACAGAGGCCACCTTGTTAGTATTCCTCTCGCTGTGTGTCCCACCTCTGTCATTGGGTGATAACAAGTGAACAACCAATCACTTAGCATGTATTCTGCCAATCCCAGATATTTGTTGGATGAGTGTGTTCATTAAGAAACATACTAAATTGAAAAGCTCTATCAATTTATCTTAACTGGACGCTGACCAGGATGGGCAGCAGTCAAAAATGAAAAAAATTGTATTGCAGCTCACTCTCATAATTATGTGTTCTGGTTCTGGCAAATATTTTTCTCTAGCTTCTAAAGAAATAGAGAGAAGAGGTTTTAACTCCAGAACCATGGATAAAAATCATTGTTCAGTTCCATTGAAAGAAAAACGGGAAAGCGCTTTGTTCAGCGTTAAAGTAAAATGTCCTATGGACTCCCCGTTTCATCCTCTGTGTTTGTTTCATTAAAAGAACCAGTCCCTCTTCCCCATTCAGTATAGGGTATATTTTTCCATACCCGTTTCATCCTGTGTTTCTTTCATTAAAAGAACCATTCCCTCTTTAGGGTTCCTTCTAAAAAAAAAA

Ace file of the UniGene sp_v2.0_unigene31081

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidase, putative n=1 Tax=Ricinus communis RepID=B9SEE1_RICCO	-	-	51%
FL-Next	tr=Peptidase, putative; Ricinus communis (Castor bean).	-	-	54%
Blast2go	subtilisin-like protease-like	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Peptidase S8A, DUF1034 C-terminal	IPR010435	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SEE1

Fln msg: your sequence is longer than subject: 853 - 804

Fln protein: MGTEPTACIDSLVTTMPSRLIFVLIQVLGLFLEPLRGEVYVVLMRDEPVVSYKGSIPGYPATGSFSGIKVDVTSQYVELYRNYLIKSHNMVLQNTLQKGTYSKLYSYHHLVNGFAVETNSAEAAERLAVAEGVRCIQKDRKIEKLTTHTPDFLGISSHVWPLLGGARNSGEGVVIGMIDSGIDPIHPSFSNSQFSEGALSRGRHNPKNRHRNYTGKCEMAKEFPKGSCNGKIIGAQHFDLSIKAAGQFNVTADSASPFDTGGHGSHTASTAAGNHGVPVTVNGFNYGFASGMAPGARIAVYKAIYSMGGYLADVVAAIDQAVEDGVDILSLSIGPSSISSDVSAFLDVLDVELLYAVKAGVFVVQAGGNNGPVASSVLSFSPWISTVAASLTDRTYNNFVELGNGQKYAGLGLSPPTKGESEYYRMVTAMDAFDKNSSYSGVNTCQYPEAFIKKVVEGNILICSYTIDFDLEVASITTVSDTAQKLGAAGFVMTVDPTFGSLSFRSGPAIFTSPGTIVLDEQSSLNLLTYYSNNTRRDASGSVVEFGATARIGDGRVAAYSGEGPTVASYSSRGPDLNNKAGQFADVLKPNIMAPGHLIWAAWSPTSVDDKVFREQNFAMVSGTSMATPHVAGVAAMIKQNHPDWSSAAISSAMMTTASTADRFGKPILAQSPWGNISAQLGNLAGAATQFDYGAGLINPARAMDPGLVFDADFDDYMSFLCSLPGVDEASVREATGMGCSSRMTWASDLNTASITVGNLMGSRKVHRVVKNVAADYSKEVYEANITDPEGVKVKVKPRKFTIHKGSSKSLLVTLKVKVATGTFVFGEIVLTGNRGHLVSIPLAVCPTSVIG*

Protein Length: 854

Fln nts: TACTATTGGGGGTCCTCAACTGAA_-_ATGGGGACTGAACCCACAGCCTGTATTGACTCATTAGTGACAACTATGCCTTCAAGATTAATTTTTGTGTTAATACAGGTTTTGGGGTTGTTTCTTGAACCCTTGAGAGGGGAGGTTTATGTTGTATTGATGAGAGATGAACCTGTGGTCTCTTACAAGGGTTCAATTCCAGGATATCCTGCTACTGGATCGTTCTCAGGCATCAAGGTTGATGTCACCAGCCAATATGTAGAGTTATACCGGAACTATTTGATCAAAAGCCACAATATGGTACTCCAGAATACTCTCCAAAAGGGCACATACAGTAAATTGTATAGTTATCATCACCTTGTCAATGGTTTTGCTGTGGAGACTAATTCGGCTGAGGCAGCAGAACGCTTGGCAGTGGCAGAAGGGGTAAGGTGCATTCAGAAAGACAGAAAGATTGAAAAACTGACCACCCACACCCCTGATTTCCTAGGTATTTCCTCTCATGTGTGGCCTCTACTCGGTGGTGCTCGGAACTCAGGGGAAGGAGTGGTGATTGGGATGATTGACAGTGGTATCGACCCCATTCATCCGAGCTTCTCCAACTCTCAGTTTAGTGAAGGAGCACTTTCCAGGGGACGCCATAATCCCAAAAACAGACACAGGAATTACACTGGTAAATGCGAGATGGCCAAAGAATTCCCAAAAGGTTCTTGCAATGGGAAGATCATAGGTGCACAGCATTTTGATTTATCAATAAAAGCAGCAGGCCAATTCAATGTTACAGCAGATTCTGCTTCTCCTTTCGATACCGGTGGCCATGGAAGCCATACAGCCTCAACTGCCGCTGGAAATCATGGAGTTCCCGTGACTGTAAATGGTTTCAACTACGGATTTGCAAGTGGCATGGCACCTGGTGCTCGGATTGCGGTCTATAAAGCGATTTATTCCATGGGAGGATACTTGGCAGATGTGGTAGCTGCAATTGATCAGGCAGTAGAGGACGGAGTAGACATACTGAGCCTGTCAATAGGTCCATCAAGTATTAGCTCGGATGTTTCAGCATTTTTGGATGTCCTGGACGTTGAGCTCCTTTACGCGGTAAAAGCAGGTGTTTTCGTTGTTCAAGCAGGTGGTAATAACGGGCCCGTTGCCAGCAGTGTGCTGTCCTTCAGTCCATGGATCTCCACAGTCGCTGCTTCGCTCACAGACAGAACATATAACAACTTCGTTGAACTAGGCAATGGGCAAAAATATGCTGGGCTTGGTCTTTCTCCTCCCACTAAAGGAGAATCAGAATATTACAGAATGGTGACTGCCATGGACGCCTTTGACAAGAACAGTTCTTACAGCGGAGTGAATACTTGCCAGTATCCGGAAGCCTTCATCAAGAAAGTAGTTGAGGGGAACATTTTAATCTGCAGCTATACTATTGACTTCGACCTGGAAGTGGCCAGCATAACGACAGTTTCAGACACTGCTCAGAAATTGGGTGCCGCAGGATTTGTGATGACAGTAGATCCCACTTTTGGATCGCTGTCTTTTAGGAGCGGCCCTGCTATTTTTACAAGCCCTGGGACAATTGTCCTGGACGAGCAGTCTTCTTTGAACCTGTTGACGTATTACAGTAACAATACCAGGCGCGATGCAAGTGGCTCCGTCGTAGAATTTGGAGCAACAGCTAGAATTGGGGATGGGCGAGTTGCGGCATACAGTGGCGAGGGCCCAACGGTTGCTTCCTATTCTTCTCGAGGACCTGATCTCAACAATAAAGCTGGGCAATTTGCTGATGTCCTCAAACCAAATATAATGGCTCCCGGCCACCTTATATGGGCTGCTTGGAGCCCAACCAGCGTTGATGACAAAGTCTTCCGAGAGCAGAACTTCGCAATGGTCTCAGGCACCAGTATGGCGACACCCCATGTGGCAGGAGTCGCAGCGATGATCAAACAGAATCATCCGGATTGGAGTTCAGCTGCTATTTCTTCCGCTATGATGACGACTGCATCAACGGCAGATCGCTTTGGAAAACCGATTCTTGCACAGAGTCCGTGGGGAAATATATCTGCCCAGTTGGGGAATCTCGCCGGGGCTGCCACCCAGTTCGATTATGGTGCAGGTCTCATCAATCCTGCAAGGGCTATGGATCCGGGCCTCGTTTTTGATGCGGATTTTGATGATTATATGAGTTTCTTATGCTCTCTCCCTGGAGTGGACGAGGCCTCTGTGCGTGAGGCAACAGGAATGGGATGCTCATCAAGAATGACTTGGGCCTCAGATCTGAATACTGCTTCAATCACAGTCGGGAATCTTATGGGCTCTAGGAAAGTGCATCGCGTGGTGAAGAATGTAGCTGCAGATTATTCAAAAGAGGTGTACGAGGCCAACATTACAGACCCAGAGGGTGTGAAGGTCAAAGTAAAGCCTCGTAAATTCACCATACACAAGGGCTCATCTAAATCGTTATTGGTGACCTTAAAAGTGAAGGTGGCTACAGGCACGTTTGTATTTGGAGAGATTGTGTTGACTGGTAACAGAGGCCACCTTGTTAGTATTCCTCTCGCTGTGTGTCCCACCTCTGTCATTGGGTGA___TAACAAGTGAACAACCAATCACTTAGCATGTATTCTGCCAATCCCAGATATTTGTTGGATGAGTGTGTTCATTAAGAAACATACTAAATTGAAAAGCTCTATCAATTTATCTTAACTGGACGCTGACCAGGATGGGCAGCAGTCAAAAATGAAAAAAATTGTATTGCAGCTCACTCTCATAATTATGTGTTCTGGTTCTGGCAAATATTTTTCTCTAGCTTCTAAAGAAATAGAGAGAAGAGGTTTTAACTCCAGAACCATGGATAAAAATCATTGTTCAGTTCCATTGAAAGAAAAACGGGAAAGCGCTTTGTTCAGCGTTAAAGTAAAATGTCCTATGGACTCCCCGTTTCATCCTCTGTGTTTGTTTCATTAAAAGAACCAGTCCCTCTTCCCCATTCAGTATAGGGTATATTTTTCCATACCCGTTTCATCCTGTGTTTCTTTCATTAAAAGAACCATTCCCTCTTTAGGGTTCCTTCTAAAAAAAAAA

Fln Alignment:

AllPineV4_c14195___MPSRLIFVLIQVLGLFLEPLRGE--VYVVLMRDEPVVSYKGSIPGYPATGSFSGIKVDVTSQYVELYRNYLIKSHNMVLQNTLQKGTYSKLYSYHHLVNGFAVETNSAEAAERLAVAEGVRCIQKDRKIEKLTTHTPDFLGISSHVWPLLGGARNSGEGVVIGMIDSGIDPIHPSFSNSQFSEGALSRGRHNPKNRHRNYTGKCEMAKEFPKGSCNGKIIGAQHFDLSIKAAGQFNVTADSASPFDTGGHGSHTASTAAGNHGVPVTVNGFNYGFASGMAPGARIAVYKAIYSMGGYLADVVAAIDQAVEDGVXXXXXXXXXXXXXXXXXAFLDVLDVELLYAVKAGVFVVQAGGNNGPVASSVLSFSPWISTVAASLTDRTYNNFVELGNGQKYAGLGLSPPTKGESEYYRMVTAMDAFDKNSSYSGVNTCQYPEAFIKKVVEGNILICSYTIDFDLEVASITTVSDTAQKLGAAGFVMTVDPTFGSLSFRSGPAIFTSPGTIVLDEQSSLNLLTYYSNNTRRDASGSVVEFGATARIGDGRVAAYSGEGPTVASYSSRGPDLNNKAGQFADVLKPNIMAPGHLIWAAWSPTSVDDKVFREQNFAMVSGTSMATPHVAGVAAMIKQNHPDWXXXXXXXXXXXXXXXXDRFGKPILAQSPWGNISAQLGNLAGAATQFDYGAGLINPARAMDPGLVFDADFDDYMSFLCSLPGVDEASVREATGMGCSSR-MTWASDLNTASITVGNLMGSRKVHRVVKNVAADYSKEVYEANITDPEGVKVKVKPRKFTIHKGSSKSLLVTLKVKVATGTFVFGEIVLTGNRGHLVSIPLAV
B9SEE1_______________MASTITFAFFIFVVKFFELLQIEAKVFMILMDEEPVFAFKSK---------YTNPRIEEVMDYKESLSN----SHDLFLESLLQKGTYTKLYSYTHLLNGVAVHVESEEVSSILKNARGVRAIHEDTKMEKLTTHTPDFLGIPAGIWPSLGGPERSGEGVVIGMIDTGINPYHPSFTN-------MSMGSINSTK----FRGQCATGENFPLTACNGKIVGAQYFARAAIAAGDFITSRDFASPFDADGHGSHTASTAAGNHQIPVIANDFNYGNASGMAPGARIAVYKALYTFGGYMSDVVAAVEKAVEDGVDILSLSIGPSSVPPGPSAFLNVLEMELLFATKAGIFVVQAAGNGGPSSSSVLSFSPWITSAAASITDRKYNNTIILGNGKSFSGTGLAPPTSGEVPFLLAAAADVSHGNVTSVVEVESCQHPEHFIKSLVWEKLIICTYTFDFEYEDASIATVEDTIQQIGAAGFIITMDPDISSEQIKGTTMTMRVPAIILNTMQASSALWEYYNSNTIRSRSGQAVAFSATARILDGRQAFFTGQAPIVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPDSEGDPYVKGQNFALVSGTSMATPHIAGVAALIKQKHPKWSPAAITSAMMTTADTTDCFGSPILAQS---------SNQLAPATPFDFGAGSINPARAIDPGLIFDARFEHYVQFLCAVPGVDDESVRRAVGIGCPIRGRAWCSDLNTASVTISNLVGSRKVIRRVTNVSR--RNEVYRVTVREPLGVNVTVKPQVFWVRGNASRHFRILLKARKAMRTYTFGEIILYGSRNHVVRVPIAV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1448	80		20		0.995493
1519	83		16		0.994512
2419	87		12		0.992554
2443		12		87	0.992554
3001		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain