SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene31015

Length: 1437 nt

Origin of reads: Inia v1 Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene31015 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	large subunit ribosomal protein L24e [Arabidopsis thaliana] ref\|NP_001078059.1\| large subunit ribosomal protein L24e [Arabidopsis thaliana] sp\|O22165.1\|RLP24_ARATH RecName: Full=Probable ribosome biogenesis protein RLP24 gb\|AAC31838.1\| 60S ribosomal prote	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	large subunit ribosomal protein l24e	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	82%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L24e-related	IPR000988	-	0.0	-
Sma3	TRASH	IPR011017	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKH8

Fln msg:

Fln protein: MKLEKCWYCSSTIYPGHGIQFVRNDCKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRKLHGKDLTKDTTFEFERRRNRPERYDRNVVQNTLKAIKKIEEVRISREAKLWENRMKGNNAKQMKEDTGELEQGIHLVKAPLAMQEEPGLALPRKAKIMRVKVSISKQQKEHDAMEE*

Protein Length: 175

Fln nts: ATGGGCGCCTAGCAGGGGTCGATAGCCCTCGCTTCTGCTATCATTCCTGCCTGTCTATCGCCGTATGTGTCTCGTCGAGGTCGAGAAGAGTCCCAAGCCCGTGGCATCTTGGGCCATGCCTGCAGAGTCCCAGTAAAGCCAAGCATCCATTTCCAAGGAATGGGCATGAGCGAATATTAAGAGATTACAAAGGTTCACAGGTGGGTACTGGAACTTCCCTAAGTCCAGACTCTTTGATCCGGTGCATTTTTCAAGTGTGAGCACCTTCAGCTTTCCACTACAGCTTCCTAAAGCATCTATCAGGCCAAAGTGAGATATCATATTGCATTCCTCTAACTGTAAATTTTCAAGCGAAATTGCAGTTTTGGTCACACTTGCGCGCACTAGGGCAGCCTTGTCCGATGGACTCCAAACCCAGCTTAGACACAGGAAGGGTTCGGACTAGCGCGAGGAGCACAGCCAAGCA_-_ATGAAGCTCGAGAAGTGTTGGTACTGTTCGTCTACAATTTATCCCGGTCATGGGATCCAATTCGTGCGCAATGATTGCAAGATATTCCGGTTTTGCCGTTCCAAATGTCATAAGAATTTCAAAATGAAACGTAACCCTCGAAAGGTGAAGTGGACTAAAGCATACAGAAAGCTACACGGAAAAGACCTTACTAAGGACACAACGTTTGAGTTTGAGAGAAGAAGAAACAGGCCCGAGAGATACGATAGAAATGTTGTTCAAAATACCTTGAAGGCCATCAAGAAGATTGAGGAAGTTCGTATTAGCAGGGAGGCTAAATTATGGGAGAACAGGATGAAGGGCAATAACGCTAAACAAATGAAAGAGGATACTGGAGAATTGGAGCAGGGCATTCATTTGGTGAAAGCTCCTCTTGCCATGCAAGAAGAACCTGGGCTTGCTTTGCCAAGAAAGGCAAAGATTATGAGAGTTAAAGTTTCCATCTCTAAGCAACAAAAAGAGCATGATGCCATGGAAGAGTAA___AATGCACATGTCAAACAGTAATCTAACCGTAATCTCACAGGGGGGAGACGTTCAGATGCCTAAGGAGTCAAACAGCGAAAAGTGAAAACAAGAAGAAGAAAAAGACTATTAAGGAGGGGGATGATCTCACAGTAATCTAACCGTAACCTACTGCTATATGCTTATGAAAATCTGGACTTTTCTAATGATGTTTTCTTTTAATCAAATCATTGTTATTTCTTCATTGTAAAGGAGTTGTGTATCATGTCTTTATGATCAGTATGAATGTTATTTACTCTGGATGCTATGTTATCCACAGATGTTAATAGTTAGTAGCAAGATATTGTATTCAGTCTTTATTTTTTTATGTTTTTTATGATCAAACTGCTTCCTCACATCTTCCATATATTGGAGTTATGATACGATTTTCAATTCTTCATTTTACACAATTAATTGGGTTACAGAGATTT

Fln Alignment:

AllPineV4_c14024___MKLEKCWYCSSTIYPGHGIQFVRNDCKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRKLHGKDLTKXXXXXXXXXXXXXXXXXXNVVQNTLKAIKKIEEVRISREAKLWENRMKGNNAKQMKEDTGELEQGIHLVKAPLAMQEEPGLALPRKAKIMRVKVSISKQQKEHDAMEE
A9NKH8_______________MRLEKCWFCSSTIYPGHGIQYVRNDCKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRKLHGKELTKDTTFEFERRRNRPERYDRNVVQNTLKAIKKIEEVRVSREAKLWENRMKGNKAKQIKEDARELEQGIHLIKAPLAMQEEPGLTLPTKAEKMKVKVSISKQQKEH-SMEE

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
92		25		75	0.996473
258	88		11		0.999952
262	82		11		0.999919
308	8		92		0.999718
353		4		80	1.0
615		11		88	0.991528
784		16		83	0.994512
823	16		83		0.994512
898		20		80	0.999999
1205		85		14	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain