SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30998

Length: 933 nt

Origin of reads: Inia v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene30998 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9STS3_PHYPA	-	-	56%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	72%
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Ribosomal protein S17	IPR000266	-	-
Sma3	Ribonucleotide reductase	IPR000358	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2L6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 270 - 357

Fln protein: QRSHL*L*LAWTPRTPSLLGMTARNRAKGHIIPQPCLCMLQISQLEKSQSR*GIWLLISY*RMR*ADLKYGVLQNSYGPGKLSPDDQAVAVRVSGDRCAFYDCRFLGYQDTVLDESGKHYFRNCYIEGAIDVICGNGKSIYQSCELHAIPIDNGAFTAQKRSSPSEDSGFVFLHCKLTGKGLMYLGRAWGPYSTVLYAHTYMDDIIFPEGWDNWNDPGRDHTVYVGQYQCDGPGARENKRVAWSHAFTHEKQVAYYLSISYIDGHKWIR*

Protein Length: 271

Fln nts: GCAGAGAAGCCATTTATAACTCTGACTGGCTTGGACGCCAAGAACACCGTCATTACTTGGAATGACTGCGCGAAATCGTGCAAAGGGACATATTATTCCGCAACCGTGTCTGTGTATGCTTCAGATCTCACAGCTAGAAAAATCACAATCCAGGTAAGGTATCTGGTTGTTAATATCATATTAAAGAATGAGATGAGCTGATTTAAAATATGGAGTTTTGCAGAATTCATATGGTCCCGGCAAACTGAGCCCCGACGATCAAGCTGTGGCGGTGAGGGTTTCGGGAGATCGTTGTGCGTTTTACGATTGCAGATTTCTTGGGTATCAGGACACCGTGTTAGACGAAAGTGGGAAGCATTACTTTCGCAACTGTTACATTGAAGGTGCCATCGATGTCATATGCGGTAATGGAAAATCTATATATCAGAGCTGCGAATTACATGCCATCCCTATAGACAATGGCGCATTTACAGCTCAAAAGAGATCCTCTCCGTCTGAAGACTCGGGCTTTGTGTTTTTGCATTGCAAGTTGACAGGCAAGGGATTAATGTATCTGGGCAGGGCATGGGGTCCTTACTCCACAGTCCTGTATGCTCACACTTACATGGATGACATTATCTTCCCGGAAGGATGGGATAATTGGAACGATCCAGGCAGAGACCATACTGTTTATGTTGGGCAGTACCAGTGTGATGGGCCAGGAGCAAGAGAAAATAAAAGAGTTGCGTGGTCCCATGCATTCACTCATGAGAAGCAGGTCGCATATTATTTGAGCATCAGTTACATTGACGGGCATAAGTGGATCAGATAG___TTGCCATCATCTTTTGTACTGAGAGTTGCAACAAATAGCAAACACGCAATGCATTCGTGTTTCTGATTCATTCCATTTTGAGTTTTTCTTCATCCGCGACTATAAAAATAACTGCATTTTGT

Fln Alignment:

AllPineV4_c13974___QAVAVRVSGDRCAFYDCRFLGYQDTVLDESGKHYFRNCYIEGAIDVICGNGKSIYQSCELHAIPIDNGAFTAQKRSSPSEDSGFVFLHCKLTGKGLMYLGRAWGPYSTVLYAHTYMDDIIFPEGWDNW-NDPGRDHTVYVGQYQCDGPGARENKRVAWSHAFTHEKQVAYYLSISYIDGHKWIR
A9P2L6_______________QAVAFRISGDKAYFLGCGFYGAQDTLCDDEGRHYFKECYIEGSIDFIFGNGRSMYKHCELHSIAKEFGSIAAQGREKPYEKTGFAFVHCTVTGTGPLYIGRAMGQYSRIVYAYTYFDDIVAREGWDDWGHQTTKDRTAFFGVYKCYGPGAAAAGGVSWVHELTPE-EARPFLVKSYVNGKHWIQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
855		87		12	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain