SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30867

Length: 604 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene30867 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative RNA methyltransferase [Arabidopsis thaliana] sp\|Q9LXB4.1\|Y5620_ARATH RecName: Full=Putative RNA methyltransferase At5g10620 emb\|CAB89381.1\| putative protein [Arabidopsis thaliana] gb\|AED91572.1\| putative RNA methyltransferase [Arabidopsis thalian	-	-	3.0e-13	48%
FL-Next	sp=Putative RNA methyltransferase At5g10620; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Blast2go	rna methyltransferase at5g10620-like	-	-	1.1212e-21	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	SPOUT methyltransferase, predicted	IPR003742	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
267			20	80	0.995493
413		66		33	0.997476
423		20		80	0.995493
424		20	80		0.995493
427	20	80			0.995493
429	16		83		0.994512
431			66	33	1.0
432		83	16		0.994512
433	16			83	0.994512
437	83	16			0.994512
438			16	83	0.994512
483	66		33		0.997452
528	40		60		1.0
585	25			75	0.996473
591	66	33			0.997453
592		33	66		0.997453
596	66			33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain