SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30838

Length: 378 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene30838
CGTCGTGACCTTGGCTGTCACTCATCTGTTCTGAAACCATTTTATCCTGATGGACTGAAAGTACTTTCTCTATTTTCTGGTATTGGTGGTGCAGAGGTTGCTTTGTATCGTATTGGAATAAATTTAAAATGCGTTGTGGCCGTGGAAACATGTCGAAAGAACAGGTTTATTCTTAGGAGTTGGTGGAGGAAAACAGGCCAAACTGGTAGACTGATCGAGAAGGAAGAGGTTCAACATTTGACCAGAGATGTACTGGAGGAGCTAATAGATACAGTAGGAGGTTTTGATCTTGTCATCGGTGGAAGCCCATGTAATAACCTATCTGGTAACAACAGATTTACCAGAGATGGACTAGAAGGGAAACATTCCGCTGTTTTC

Ace file of the UniGene sp_v2.0_unigene30838

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DRM-type DNA-methyltransferase n=1 Tax=Elaeis guineensis RepID=B4XTT0_ELAGV	-	-	9.99995e-41	67%
FL-Next	sp=DNA (cytosine-5)-methyltransferase DRM2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Blast2go	dna methyltransferase	-	-	0.0	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	gene silencing	GO:0016458	Biological Process	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	YTH domain	IPR007275	-	-
Sma3	Stress responsive alpha-beta barrel	IPR013097	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M548

Fln msg: Distance to subject end: 17 aas, your sequence is shorter than subject: 126 - 626

Fln protein: RRDLGCHSSVLKPFYPDGLKVLSLFSGIGGAEVALYRIGINLKCVVAVETCRKNRFILRSWWRKTGQTGRLIEKEEVQHLTRDVLEELIDTVGGFDLVIGGSPCNNLSGNNRFTRDGLEGKHSAVF

Protein Length: 127

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTGTTCTGAAACCATTTTATCCTGATGGACTGAAAGTACTTTCTCTATTTTCTGGTATTGGTGGTGCAGAGGTTGCTTTGTATCGTATTGGAATAAATTTAAAATGCGTTGTGGCCGTGGAAACATGTCGAAAGAACAGGTTTATTCTTAGGAGTTGGTGGAGGAAAACAGGCCAAACTGGTAGACTGATCGAGAAGGAAGAGGTTCAACATTTGACCAGAGATGTACTGGAGGAGCTAATAGATACAGTAGGAGGTTTTGATCTTGTCATCGGTGGAAGCCCATGTAATAACCTATCTGGTAACAACAGATTTACCAGAGATGGACTAGAAGGGAAACATTCCGCTGTTTTC

Fln Alignment:

AllPineV4_c13620___HSSVLKPFYPDGLKVLSLFSGIGGAEVALYRIGINLKCVVAVETCRKNRFILRSWWRKTGQTGRLIEKEEVQHLTRDVLEELIDTVGGFDLVIGGSPCNNLSGNNRFTRDGLEGKHSAVF
Q9M548_______________HLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISKVNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNRVSRVGLEGDQSSLF

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
52		33	66		0.997458
54	66			33	0.997464
62			66	33	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain