SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30813

Length: 180 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene30813
CAACTACACTTTCGAGCTGGAAAGTGTAGTTGGAATGGATCGCATGGTATGCGAATCTGACCTGCCTAAGCTCCTTTATTTACAAGCTGTGGTGAAAGAAACGCTTAGACTCCACCCATCGGGGCCTTTCTTGTTGCGCCACTTACCTGGCACGTCCTGCAATGTATTGGGCTATGAAAT

Ace file of the UniGene sp_v2.0_unigene30813

If you push the Download ace button, you will download an ace file of this UniGene.

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Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	flavonoid 3'-hydroxylase 1 [Lupinus cosentinii]	-	-	3.0e-10	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	flavonoid 3 -hydroxylase	-	-	1.42112e-22	76%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNX9

Fln msg: Distance to subject end: 128 aas, your sequence is shorter than subject: 59 - 462

Fln protein: NYTFELESVVGMDRMVCESDLPKLLYLQAVVKETLRLHPSGPFLLRHLPGTSCNVLGYE

Protein Length: 60

Fln nts: CAACTACACTTTCGAGCTGGAAAGTGTAGTTGGAATGGATCGCATGGTATGCGAATCTGACCTGCCTAAGCTCCTTTATTTACAAGCTGTGGTGAAAGAAACGCTTAGACTCCACCCATCGGGGCCTTTCTTGTTGCGCCACTTACCTGGCACGTCCTGCAATGTATTGGGCTATGAAAT

Fln Alignment:

AllPineV4_c13546___ELESVVGMDRMVCESDLPKLLYLQAVVKETLRLHPSGPFLLRHLPGTSCNVLGYE
B8LNX9_______________ELERVVGLGRMVCESDLPRLVYLQAVVKETLRLYPSGPFLTRHLSAASCNVLGYE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
14		33	66		0.997452
20		33	66		0.997453
22	66			33	0.997453
23	66	33			0.997454
24		33	66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain