SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30798

Length: 728 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene30798 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2R3I0_ORYSJ	-	-	7.0e-12	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Blast2go	retrotransposon unclassified	-	-	8.56078e-14	55%

Full-Lengther Next Prediction

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
377		25	75		0.996473
392	40		60		1.0
395		60		40	1.0
396	40		60		1.0
400			75	25	0.996473
405		80		20	0.995493
418	40	40		20	1.0
419			80	20	0.995493
421	20		80		0.995493
423	80	20			0.995493
441	20		80		0.995493
455	80		20		0.995493
457		80		20	0.995493
463		80		20	0.995493
464	20		80		0.995493
465	40		60		1.0
466	20	80			0.995498
469		66		33	0.997452
471		66		33	0.997452
472		33		66	0.997452
474	33	66			0.997452
477		33		66	0.997452
485		75		25	0.996481
487	25		75		0.996478
497	66	33			0.997452
514		66		33	0.997452
515	33		66		0.997452
516	33		66		0.997452
518		66		33	0.997452
527		33		66	0.997452
529		66		33	0.997452
536	66	33			0.997452
537	50	50			1.0
542	25		75		0.996473
564	33	33		33	0.997752
588	33		66		0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain