SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30797

Length: 2281 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene30797
ATGGGGGTGATTGTCGAACCAAGAACCAAGAAGTTAGAAGCGCGCACTCTGGGAATTGTGGATCGCTCGAGTCGATTATTGTTAAATCAGGCATTGTGGTATAGTGGGGAATTCGATCATTTATCCGTTATCTAGCAGGAGTTGTGGTATCGATTTTCATCAATTTCTGTGCTTATTGGAGATAAATTTAGCGGAAGAAGTGCCGCTTGATTGTTTGAAGCCGCAAAATGAGTCCTATGTACGCGTATGGCGAACCCAGCCCACAAACTTATCCTCCATATTACTGGGCTCCGCCAAATGTACCACGTCCCCAGCCAATTTCAGCTCCGTGGATAGAACCTTATTATCGTTATAGAGAATCGCCGGGGAATTATTATGGTCATCTGCACGATTGTGGCTTTCAATATGGGGGCGGTCCGTACTGGCATTGTCCTCCCGAGTATGAATTTTACAGGCCTAAGTTCAGGAATTATGAAGGAGATGGTAGAGATTTTAGGCCTTACACCTGTGCTCCTCCGCCTTCTTCTTTTGTATATAGTCGACCTTTCAATCCCAATGAACAATTCCGGCACCCAGATGATTACCCGATGAGATTCGTACCCACGACTGGTTATGATCGCTTTGGCCCTTATCCCTTTGAACGGCATTGCTGCGGGTGCCCGAATCACGTAGGTTATCCTAAGCCGGTTGAGAGGATAAGTGATGACGTTGTTGATGAAAAACGAATTAAGGATTCTAAGGACAGTGATGGTAAATCGATGACGGATGATATCGAGAAAAAGAGGTCGGAGAATTTGCAGGAGCTTCCGGAACACGTTGTCTGGATTCCGAGATCTTTGTCTGATCGCAATGAGGAGAGACATCCCGTGTATTGGGTTCCTTGGAACAGAAAATCCACAGAGGGTGATCGAGAACAGGCGTTTCCCGGCTATTGGATTCCTCTGGATTCGAACACGGCATCTCGTGATCGGAAAACTGAAGACGAAAGTGCAGAGGAGAGACATCCCGTGTATTGGGTTCCTTGGAGCAGAAAATCCACAGAGGGTGACCGAGAACGGCCGTTTACAGGTTATTGGATTCCTTTCGATTCGAACACGGGATCTCGTGATCGGAAAACTGAAGATGAAAACGCGAAGTTTCCATCATTTCCCGTCTTCTGGATTCCGAGAAAGTTTGAAGGAGAAGGAGATGCAAAGGTGCGTAACCCTCCGCAAGAGACCAAGAAAACAGAGGGACGAGATGCCTCGAATGTAGAAAACATCCAACAAAAGTCCATAAAAACAAATGGAGGAGAAGCCGAGATATTAAACGAGGGCATTAATGGTAGGCCTGCACAGGAGAAAAAGGAAGCTGCAGTGGCGAGAGAAATTCCTGTGAAACAGCTTGGGGAAGAAGGAAAAGCTTCACAATCCTCGAAAGTGGAGAGGGTTTCGAAGGTTTCAGATGATAATCATCACGTGAAGAAGGCATCTTCGCCCCGGGCTTCCAAACTTCCTCCTGTGTGTCTGAGGGTCGATCCTCTGCCTAGCAAGAAAACGAATGGGACGAGCTCTCCCAGGTCTCCTAGTCCTCCTCACAAAGAGGAAGAAAACAAAGATAAGGTAGCTGTAAAGGCCGAAGGAAATGCAAATGCCAATAGGACAAGCTCTTCCAGGTCTCCCAGCCCTCCTCGTAAAGTGGAAGAAAGCAAGGGTAAGGTTGCTGTAAAGGCTGAAGGAAATCCAAATAACAGTGCTTCAAAAGTTGATACAGAAACAAATAAGGGTGAACAGCAATCCAATGCCAGTGCTTCAAATGTTAGCATAGAAACCAAAAGGAATGAACAGCTGACGAAAGAAATAGAGATCGGTCAGGACCAAGCGGCCGTGAAAATTCAGGCCCTTTATCGTGGATATCAGGTACGAAAGTTTCAGCCTCTGACAAAACTCCGCGAGATTATGAAAATTAAAGGACGGGTCGAGGATCTTAGACAGCAAATGTCAAGTCCTAAGTTCATCGAAGAGATGAGCAGAGATTCTAAAGCTAGGGGGAAATTTAATGAGACTCTCATGGGCCTCTTGCTTCAGCTAGATACGATTCAGGTTAGAAAACAAGCTAAATATCTTGCATAATTTCTTCTCAGTTATATTGTTGTATTTGCATTAGTACAAATGCAGTTAAGCCTGGTTTGATATGCATTTTGAAACTATGAATCGACTTTCAACATTCACCATTTCTCAAATTCCAGTACCGAGTAGTGTTGTTATCTGTGTCACTTTGTTATATATATATATATATACGT

Ace file of the UniGene sp_v2.0_unigene30797

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BCL-2-associated athanogene 6 [Arabidopsis thaliana] gb\|AAC62882.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC10664.1\| BCL-2-associated athanogene 6 [Arabidopsis thaliana]	-	-	8.0e-25	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	bcl-2-associated athanogene 6	-	-	6.53758e-38	45%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abiotic stimulus	GO:0009628	Biological Process	6.53758e-38	45%
Blast2go	response to stress	GO:0006950	Biological Process	6.53758e-38	45%
Blast2go	programmed cell death	GO:0012501	Biological Process	6.53758e-38	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW49

Fln msg: your sequence is longer than subject: 163 - 97

Fln protein: MISRKRGRRICRSFRNTLSGFRDLCLIAMRRDIPCIGFLGTENPQRVIENRRFPAIGFLWIRTRHLVIGKLKTKVQRRDIPCIGFLGAENPQRVTENGRLQVIGFLSIRTRDLVIGKLKMKTRSFHHFPSSGFRESLKEKEMQRCVTLRKRPRKQRDEMPRM*

Protein Length: 164

Fln nts: ATGGGGGTGATTGTCGAACCAAGAACCAAGAAGTTAGAAGCGCGCACTCTGGGAATTGTGGATCGCTCGAGTCGATTATTGTTAAATCAGGCATTGTGGTATAGTGGGGAATTCGATCATTTATCCGTTATCTAGCAGGAGTTGTGGTATCGATTTTCATCAATTTCTGTGCTTATTGGAGATAAATTTAGCGGAAGAAGTGCCGCTTGATTGTTTGAAGCCGCAAAATGAGTCCTATGTACGCGTATGGCGAACCCAGCCCACAAACTTATCCTCCATATTACTGGGCTCCGCCAAATGTACCACGTCCCCAGCCAATTTCAGCTCCGTGGATAGAACCTTATTATCGTTATAGAGAATCGCCGGGGAATTATTATGGTCATCTGCACGATTGTGGCTTTCAATATGGGGGCGGTCCGTACTGGCATTGTCCTCCCGAGTATGAATTTTACAGGCCTAAGTTCAGGAATTATGAAGGAGATGGTAGAGATTTTAGGCCTTACACCTGTGCTCCTCCGCCTTCTTCTTTTGTATATAGTCGACCTTTCAATCCCAATGAACAATTCCGGCACCCAGATGATTACCCGATGAGATTCGTACCCACGACTGGTTATGATCGCTTTGGCCCTTATCCCTTTGAACGGCATTGCTGCGGGTGCCCGAATCACGTAGGTTATCCTAAGCCGGTTGAGAGGATAAGTGATGACGTTGTTGATGAAAAACGAATTAAGGATTCTAAGGACAGTGATGGTAAATCGATGACGG_-_ATGATATCGAGAAAAAGAGGTCGGAGAATTTGCAGGAGCTTCCGGAACACGTTGTCTGGATTCCGAGATCTTTGTCTGATCGCAATGAGGAGAGACATCCCGTGTATTGGGTTCCTTGGAACAGAAAATCCACAGAGGGTGATCGAGAACAGGCGTTTCCCGGCTATTGGATTCCTCTGGATTCGAACACGGCATCTCGTGATCGGAAAACTGAAGACGAAAGTGCAGAGGAGAGACATCCCGTGTATTGGGTTCCTTGGAGCAGAAAATCCACAGAGGGTGACCGAGAACGGCCGTTTACAGGTTATTGGATTCCTTTCGATTCGAACACGGGATCTCGTGATCGGAAAACTGAAGATGAAAACGCGAAGTTTCCATCATTTCCCGTCTTCTGGATTCCGAGAAAGTTTGAAGGAGAAGGAGATGCAAAGGTGCGTAACCCTCCGCAAGAGACCAAGAAAACAGAGGGACGAGATGCCTCGAATGTAG___AAAACATCCAACAAAAGTCCATAAAAACAAATGGAGGAGAAGCCGAGATATTAAACGAGGGCATTAATGGTAGGCCTGCACAGGAGAAAAAGGAAGCTGCAGTGGCGAGAGAAATTCCTGTGAAACAGCTTGGGGAAGAAGGAAAAGCTTCACAATCCTCGAAAGTGGAGAGGGTTTCGAAGGTTTCAGATGATAATCATCACGTGAAGAAGGCATCTTCGCCCCGGGCTTCCAAACTTCCTCCTGTGTGTCTGAGGGTCGATCCTCTGCCTAGCAAGAAAACGAATGGGACGAGCTCTCCCAGGTCTCCTAGTCCTCCTCACAAAGAGGAAGAAAACAAAGATAAGGTAGCTGTAAAGGCCGAAGGAAATGCAAATGCCAATAGGACAAGCTCTTCCAGGTCTCCCAGCCCTCCTCGTAAAGTGGAAGAAAGCAAGGGTAAGGTTGCTGTAAAGGCTGAAGGAAATCCAAATAACAGTGCTTCAAAAGTTGATACAGAAACAAATAAGGGTGAACAGCAATCCAATGCCAGTGCTTCAAATGTTAGCATAGAAACCAAAAGGAATGAACAGCTGACGAAAGAAATAGAGATCGGTCAGGACCAAGCGGCCGTGAAAATTCAGGCCCTTTATCGTGGATATCAGGTACGAAAGTTTCAGCCTCTGACAAAACTCCGCGAGATTATGAAAATTAAAGGACGGGTCGAGGATCTTAGACAGCAAATGTCAAGTCCTAAGTTCATCGAAGAGATGAGCAGAGATTCTAAAGCTAGGGGGAAATTTAATGAGACTCTCATGGGCCTCTTGCTTCAGCTAGATACGATTCAGGTTAGAAAACAAGCTAAATATCTTGCATAATTTCTTCTCAGTTATATTGTTGTATTTGCATTAGTACAAATGCAGTTAAGCCTGGTTTGATATGCATTTTGAAACTATGAATCGACTTTCAACATTCACCATTTCTCAAATTCCAGTACCGAGTAGTGTTGTTATCTGTGTCACTTTGTTATATATATATATATATACGT

Fln Alignment:

AllPineV4_c13518___LSGFRDLCLIAMRRDIPCIGFLGTENPQRVIENRRFPAIGFLWIRTRHLVIGKLKTKVQRRDIPCIGFLGAENPQRVTENGRLQVIGFLSIRTRDLVIGKLKMKTRSFHHFPSSGFRESLKEKEMQR
A9NW49_______________LSGFRDLCLIAMR-----------------------------------------------RNIPCIGFLGIENPPRVAENGRIPVIGFLWIRTRDLVIGKLKMKMRSYHHFPSSGFRQSLKEKGTRR

SNPs (tot: 3)

Position	A %	C %	T %	Probability
2232	20		80	0.995493
2233	20		80	0.995493
2234	20	80		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
2261	2278	TA TA TA TA TA TA TA TA TA	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain