SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30628

Length: 1696 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene30628 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] gb\|AAK64062.1\| putative RB-binding protein [Arabidopsis thaliana] gb\|AAS46255.1\| putative RB-binding protein [Arabidopsis thaliana] gb\|AEE34105.1\| transcription factor ju	-	-	9.94922e-44	30%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	37%
Blast2go	lysine-specific demethylase 5d	-	-	0.0	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C5HC2-type	IPR004198	-	0.0	-
Sma3	Lysine-specific demethylase-like domain	IPR013637	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BNM1

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 565 - 1220

Fln protein: LERAEECLLGKRDQLASETFHHNDINTLYDLKAQVSKIPIVLPEKELLEKLIQNVEMWQARARELLKSPVKLEDLEVALQNAENFYINIPELQLLRQYKCNALSWIERCHNILDNVHEEIDYSNVVEDLTSVLAEGRTMRIQVKELDIVEVELRKFLWKEKASKALGRRLPLKILEELTTEVSKLQLPNEKLVLEVFTTVEAAYSWEKIAKNLRRDLGCHSNFKDLIRKSDDIRTTLPSLPSIEASILSAESWLENAKPFLDRIFTDQPCGPPLKVDVLKELLEKSKVLKVSLKESDILITVLKNVEAWCSQTALLLSSANLLLNSQSGWDAVHDNDKDLNNLMTKLDQLMTFLQSSIKTGLKLGFELDEITKLEEVSAALTWNLKALSFSSKSPSIEDVESLIKDAKNLPISSREYKLLESSLLESKRWLKKALLIIPGPSSKKKCNILELEELVSETQKLRISFPIMVGHINAAIHNHRAWQKQVQTFFDCQSTDLTLPELLKLQEVGECSIVEDDMLGMLASKITDISSWVLRCKSAIGCLDTSALQLRDFLVQINNSLERA

Protein Length: 566

Fln nts: CTTGAGCGTGCAGAAGAATGCTTGTTAGGCAAGAGAGATCAGTTAGCTTCAGAAACGTTTCACCACAATGACATAAATACTCTTTATGATCTGAAGGCACAGGTTTCAAAAATTCCTATTGTCCTTCCAGAAAAGGAACTTCTGGAAAAGCTTATCCAAAATGTTGAAATGTGGCAAGCACGTGCTAGGGAGCTGCTCAAATCACCCGTTAAACTAGAGGACCTAGAAGTTGCATTGCAAAATGCGGAGAACTTCTATATAAACATACCTGAGTTACAATTACTGAGACAATATAAGTGCAATGCTTTATCCTGGATTGAGCGTTGCCACAATATTCTTGACAATGTCCATGAAGAGATAGACTATAGTAATGTTGTTGAGGATCTGACATCAGTTTTGGCAGAGGGAAGGACCATGAGAATTCAAGTAAAAGAATTGGACATTGTGGAAGTGGAGCTTAGGAAATTTTTGTGGAAGGAGAAAGCATCAAAGGCTCTTGGCCGACGATTACCTTTGAAGATCCTAGAAGAATTGACAACAGAAGTTTCAAAGTTGCAGCTGCCAAACGAAAAGTTGGTTCTTGAAGTTTTTACGACTGTGGAAGCTGCATATTCTTGGGAAAAAATTGCTAAGAATCTTCGTCGTGACCTTGGCTGTCACTCAAATTTTAAGGATCTCATCAGGAAGTCTGATGACATTCGTACAACCTTGCCAAGTCTTCCCAGTATTGAGGCTTCTATTTTGAGTGCTGAGTCATGGTTGGAAAATGCCAAACCATTCTTGGACCGAATTTTCACGGATCAGCCATGTGGACCCCCTTTAAAAGTTGATGTGCTTAAGGAGCTTCTTGAAAAGTCTAAGGTTCTTAAAGTGTCCCTTAAGGAATCAGACATTCTAATAACGGTTTTGAAGAATGTGGAGGCTTGGTGTTCTCAAACAGCCTTGTTACTCTCATCTGCGAATCTACTTCTCAATAGCCAGAGTGGATGGGATGCAGTCCATGACAATGACAAGGACTTGAATAATCTTATGACGAAACTCGATCAACTGATGACATTTCTGCAGTCGTCTATTAAAACTGGTTTGAAACTTGGATTTGAATTAGATGAGATAACAAAGCTCGAAGAGGTTTCAGCTGCCTTGACATGGAACCTGAAGGCTCTCTCTTTTTCTTCCAAGTCTCCATCAATAGAGGATGTTGAGAGTCTGATAAAAGATGCCAAAAATCTACCCATTTCATCTAGAGAATATAAATTGTTAGAAAGTTCATTGCTTGAGAGTAAGAGGTGGCTTAAGAAAGCACTTCTAATCATTCCGGGGCCATCTTCGAAGAAAAAATGCAATATTCTGGAACTGGAAGAGCTTGTTAGTGAAACTCAGAAATTGAGAATTTCTTTTCCCATTATGGTTGGTCATATAAATGCAGCTATCCATAATCATAGAGCTTGGCAAAAGCAGGTGCAGACTTTCTTTGATTGCCAGTCTACTGATCTTACGTTGCCGGAGTTGCTCAAACTGCAGGAAGTTGGAGAGTGTAGTATTGTGGAGGATGACATGTTAGGAATGCTTGCTTCAAAAATAACTGATATTAGCAGTTGGGTTTTACGTTGCAAGTCTGCCATTGGTTGTTTAGATACATCGGCACTACAGTTGCGAGATTTTCTTGTACAGATAAACAATTCTTTGGAGAGAGCTC

Fln Alignment:

AllPineV4_c13060___KIPIVLPEKELLEKLIQNVEMWQARARELLKSPVKL-EDLEVALQNAENFYINIPELQLLRQYKCNALSWIERCHNILDNVHEEIDYSNVVEDLTSVLAEGRTMRIQVKELDIVEVELRKFLWKEKASKALGRRLPLKILEELTTEVSKLQLPNEKLVLEVFTTVEAAYSWEKIAKNLRRDLGCHSNFKDLIRKSDDIRTTLPSLPSIEASILSAESWLENAKPFLDRIF-TDQPCGPPXXXXXXXXXXXXXXXXXXXXXXXDILITVLKNVEAWCXXXXXXXXXXXXXXXXXSGWDAVHDNDKDLNNLMTKLDQLMTFLQSSIKTGLKLGFELDEITKLEEVSAALTWNLKALSFSSKSPSIEDVESLIKDAKNLPIXXXXXXXXXXXXXXXXXXXXKALLIIPGPSSKKKCNILELEELVSETQKLRISFPIMVGHINAAIHNHRAWQKQVQTFFDCQSTDLTLPELLKLQEVGECSIVEDDMLGMLASKITDISSWVLRCKSAIGCLDTSALQLRDFLVQINNSLERA
A5BNM1_______________ELQVQLPEVEMLMDLLRXVESCQARCNEILNGPINLKQNVEVLLQELESITVNIPELKLLRQYHGDAVSWISHFNDVHVNIHEREDQENVVDELQCILKQGLLLRIQVDELPLVEVELKKAYCRKEALKARRTKMTLFSIQQLMEEAAMLQIEGEQLFVDVSGVLAAAMHWEERAAHIFATEAQMSDFEDVIRTSKDIHVILPSLDDVKDAISMAKSWLKNSKPFLGSSFPAAHPSCSLLKVEALKELVSQSKLLKISLEERTMIHSVLKNCLEW------EHDSCSLLEEVDCLFNTNNIDNALINGLIPKIEHLVTMIEAILETGLSLGFDFDEIPKLQNARSILQWCXKALSFCSVAPALPGIESLMENAEHLPV-TCASSALCSSLIDGVKWLKKASEVIPVSCNGKICKLSDAEEVLSEVQRIKVSFPLMVGQLLKAIEKHKLWKEQILIFFGLKTEERSWSKLLQLKELGKDDAFSCCELDMVLSETEKVEKWKLHCMDIVGHPVGDVNSLLDALVKIKHTLDRS

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
508		33		66	0.997452
510		33		66	0.997452
613	25			75	0.996473
614	25			75	0.996473
616		75	25		0.996473
617	75			25	0.996473
729	83		16		0.994512
752	80	20			0.995493
1042	80			20	0.995498
1044		40		60	1.0
1045	40			60	1.0
1049	25		75		0.996474
1055	33		66		0.997452
1058	75	25			0.996479
1059	75	25			0.99649
1060		25	75		0.99649
1061			75	25	0.996486
1062			40	60	1.0
1065		60		40	1.0
1067	60	40			1.0
1068	40	60			1.0
1243	66	33			0.997455
1606	66			33	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain