SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30552

Length: 290 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene30552
GTTTCTTCGAAAAGCATCTTCCTGCATGCGAACGGCACGTCGTCGTTGCCGGGCTTTAGAAACTAGAGTGATGATGGCGATGTTAAAGGATGGAGATGGTTTCGGTGTGTCCAAATGGGAAGTGAAGGATAATATCAAAGAGTGCCTTATTGATCCCATTCCACTTTAATGTAATTTATGTGTACTATTTATAATAATAAATAAAATTAACCATAGTCTCTAAAAATAGGTGCAAAGATACACGGAAGGATAAAACAGTTAGGAATTGTAATAAGAAGAATGAGATGCTT

Ace file of the UniGene sp_v2.0_unigene30552

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-bisabolene synthase n=1 Tax=Abies grandis RepID=TPSD1_ABIGR	-	-	1.0e-08	77%
FL-Next	sp=Alpha-bisabolene synthase; Abies grandis (Grand fir).	-	-	0.0	77%
Blast2go	a chain structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production	-	-	3.80201e-10	86%

Source	InterPros	Term	Type	Identity
Sma3	Terpene synthase-like	IPR001906	-	-
Sma3	Terpene synthase, metal-binding domain	IPR005630	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: O81086

Fln msg: your sequence is shorter than subject: 56 - 817

Fln protein: FLRKASSCMRTARRRCRALETRVMMAMLKDGDGFGVSKWEVKDNIKECLIDPIPL*

Protein Length: 57

Fln nts: GTTTCTTCGAAAAGCATCTTCCTGCATGCGAACGGCACGTCGTCGTTGCCGGGCTTTAGAAACTAGAGTGATGATGGCGATGTTAAAGGATGGAGATGGTTTCGGTGTGTCCAAATGGGAAGTGAAGGATAATATCAAAGAGTGCCTTATTGATCCCATTCCACTTTAA___TGTAATTTATGTGTACTATTTATAATAATAAATAAAATTAACCATAGTCTCTAAAAATAGGTGCAAAGATACACGGAAGGATAAAACaGTTAGGAATTGTAATAAGAAGAATGAGATGCTT

Fln Alignment:

AllPineV4_c12805___ETRVMMAMLKDGDGFGVSKWEVKDNIKECLIDPIPL
O81086_______________ETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain