SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30383

Length: 806 nt

Origin of reads: Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene30383 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TIR/P-loop/LRR n=1 Tax=Pinus taeda RepID=Q8L8J0_PINTA	-	-	85%
FL-Next	tr=TIR/P-loop/LRR; Pinus taeda (Loblolly pine).	-	-	85%
Blast2go	rj2 protein	-	-	65%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
397			33	66	0.997457
420	66	33			0.997464
433			33	66	0.997471
443	33		66		0.997453
460		33	66		0.997471
480		50	50		1.0
482	50		50		1.0
483	50		50		1.0
514	50	50			1.0
556		50		50	1.0
567	66		33		0.997476
596		66		33	0.997452
606		66	33		0.997452
610	25		75		0.996474
612	75		25		0.996477
643		75	25		0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain