SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30372

Length: 460 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2

UniGene Fasta

>sp_v2.0_unigene30372
AAGTCTATTTTGATTACAAGGCTATCCGAGCTTCGACTGGAAACTTTGATCGGAACAACATGCTTGGCAAAGGAGGATTCGGAGAAGTTTATAAGGGAAGACTTCTGGATGGGAGGGATGTTGCCGTGAAGAAACTGAACGGAAAGCAGACTACTCAAGCTGCTGAGGAATTTCTGACGGAAGTGAAGCTCATCAGCAGCGTCCGTCACCGTAATCTTGTTCGTTTACTCGGCTGCTGCAGGCGAGGGCACAAACGCTTGCTGGTTTTCGAATTTATGTCAAATAACAGTCTTGACAAACATTTGTTCGGCGAGATAAGAAATCCTTTGAGGTGGGAAAGCCGTTTAAAAATTATAGTGGGCACAGCACGAGGCCTTGCATACCTGCACGGAGATTCCGACGTTCGCATTATACACAGAGATATCAAATGTGCAAATATACTTCTGGATGACAGATTTCA

Ace file of the UniGene sp_v2.0_unigene30372

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9SNX7_RICCO	-	-	9.94922e-44	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	serine-threonine protein plant-	-	-	0.0	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ATPase, F0 complex, subunit C	IPR000454	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Transcription regulator LuxR, C-terminal	IPR000792	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Cadherin	IPR002126	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Integrin alpha chain, C-terminal cytoplasmic region, conserved site	IPR018184	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPW7

Fln msg: Distance to subject end: 198 aas, your sequence is shorter than subject: 152 - 702

Fln protein: VYFDYKAIRASTGNFDRNNMLGKGGFGEVYKGRLLDGRDVAVKKLNGKQTTQAAEEFLTEVKLISSVRHRNLVRLLGCCRRGHKRLLVFEFMSNNSLDKHLFGEIRNPLRWESRLKIIVGTARGLAYLHGDSDVRIIHRDIKCANILLDDRF

Protein Length: 153

Fln nts: AAGTCTATTTTGATTACAAGGCTATCCGAGCTTCGACTGGAAACTTTGATCGGAACAACATGCTTGGCAAAGGAGGATTCGGAGAAGTTTATAAGGGAAGACTTCTGGATGGGAGGGATGTTGCCGTGAAGAAACTGAACGGAAAGCAGACTACTCAAGCTGCTGAGGAATTTCTGACGGAAGTGAAGCTCATCAGCAGCGTCCGTCACCGTAATCTTGTTCGTTTACTCGGCTGCTGCAGGCGAGGGCACAAACGCTTGCTGGTTTTCGAATTTATGTCAAATAACAGTCTTGACAAACATTTGTTCGGCGAGATAAGAAATCCTTTGAGGTGGGAAAGCCGTTTAAAAATTATAGTGGGCACAGCACGAGGCCTTGCATACCTGCACGGAGATTCCGACGTTCGCATTATACACAGAGATATCAAATGTGCAAATATACTTCTGGATGACAGATTTCA

Fln Alignment:

AllPineV4_c12307___FDYKAIRASTGNFDRNNMLGKGGFGEVYKGRLLDGRDVAVKKLNGKQTTQAAEEFLTEVKLISSVRHRNLVRLLGCCRRGHKRLLVFEFMSNNSLDKHLFGEI-RNPLRWESRLKIIVGTARGLAYLHGDSDVRIIHRDIKCANILLDDR
C0PPW7_______________FKFDILRESTSNFKAENKLGEGGFGSVFKGVLPDGREVAVKRLF-MGTRQADAEFLNEANLISRVQHRNLVKLLGCSVEVSERLLVYEYLQNSSLDKILFDPTKRHLLDWKKRSEIILGTARGLAYLHEESDVRVIHRDIKASNILLDDK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
124		75		25	0.996473
248	25		75		0.996473
251		75		25	0.996473
252	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain