SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30371

Length: 633 nt

Origin of reads: Biogeco2 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene30371

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycinebetaine/proline transporter n=1 Tax=Hordeum vulgare subsp. vulgare RepID=D5MSN5_HORVD	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	proline transporter	-	-	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
21	33	66			0.997461
23		66	33		0.997452
24	66		33		0.997452
68	66		33		0.997476
74		25	75		0.996479
76		75		25	0.996479
78	75		25		0.996479
80	75		25		0.996479
82		25	75		0.996481
83		25	75		0.996481
84		25	50	25	0.995571
87	66		33		0.997452
88		66		33	0.997452
89		66		33	0.997452
90		66	33		0.997452
93	33		66		0.997452
164	66	33			0.997452
282	80		20		0.995493
297	50		50		1.0
360	50		50		1.0
405	66	33			0.997452
419		33		66	0.997452
456	25		75		0.996473
457	25		75		0.996473
459		75	25		0.996473
460	75			25	0.996473
486		25		75	0.996473
539	75	25			0.996473
540			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain