SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30365

Length: 538 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene30365
AGATTTTGGCTTAGCAAGACTTTTCTCTGAAGACGAAACTCACGTCAGCACAAGAGTTGCTGGAACTTACGGGTATATGCCACCAGAGTATGCTATGCAGGGACAATTATCTGTGAAAGCTGATGTGTATAGCTTTGGCGTTCTTCTACTGGAAGTTATCACAGGAAGAAAGAACACCGATTACAATTTGTCACCTGAAATGCAGATTCTTTTGGGATGGGCATGGAGATCATACGATGGGGGAAATATTGTGCAACTGATTGATCCAGCCATAATTGAAACGTGCGATGAGACGCAAGCTTCGAGATGCATTCATGTTGGCCTTTTGTGTACACAACCCGAATCCCATCTTCGGCCACTGATGTCTACAGTAAATTTGATGCTTTCAACTGATTCTGTGACGTTATTACCTGATCCCACGAAGCCTGCTTTCGTGAGTTCCTACGTTTCCCAAACCAACCAAATAAACAGTTCTGGAACGTCACATGCGTCTGCACCCGCATCTTCTTCTGTGTCATCCGCTCACATTCCTGCGACT

Ace file of the UniGene sp_v2.0_unigene30365

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cysteine-rich receptor-like protein kinase 6 [Arabidopsis thaliana] sp\|Q9C5S9.1\|CRK6_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 6; Short=Cysteine-rich RLK6; AltName: Full=Receptor-like protein kinase 5; Flags: Precursor gb\|AAK28316.1\|A	-	-	3.0e-36	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	protein	-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Transcription regulator LuxR, C-terminal	IPR000792	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Homeobox protein, antennapedia type, conserved site	IPR001827	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Glycoprotein D/GG/GX, Herpesvirus	IPR002896	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Integrin alpha chain, C-terminal cytoplasmic region, conserved site	IPR018184	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	MULE transposase domain	IPR018289	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQB9

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 179 - 290

Fln protein: DFGLARLFSEDETHVSTRVAGTYGYMPPEYAMQGQLSVKADVYSFGVLLLEVITGRKNTDYNLSPEMQILLGWAWRSYDGGNIVQLIDPAIIETCDETQASRCIHVGLLCTQPESHLRPLMSTVNLMLSTDSVTLLPDPTKPAFVSSYVSQTNQINSSGTSHASAPASSSVSSAHIPAT

Protein Length: 180

Fln nts: AGATTTTGGCTTAGCAAGACTTTTCTCTGAAGACGAAACTCACGTCAGCACAAGAGTTGCTGGAACTTACGGGTATATGCCACCAGAGTATGCTATGCAGGGACAATTATCTGTGAAAGCTGATGTGTATAGCTTTGGCGTTCTTCTACTGGAAGTTATCACAGGAAGAAAGAACACCGATTACAATTTGTCACCTGAAATGCAGATTCTTTTGGGATGGGCATGGAGATCATACGATGGGGGAAATATTGTGCAACTGATTGATCCAGCCATAATTGAAACGTGCGATGAGACGCAAGCTTCGAGATGCATTCATGTTGGCCTTTTGTGTACACAACCCGAATCCCATCTTCGGCCACTGATGTCTACAGTAAATTTGATGCTTTCAACTGATTCTGTGACGTTATTACCTGATCCCACGAAGCCTGCTTTCGTGAGTTCCTACGTTTCCCAAACCAACCAAATAAACAGTTCTGGAACGTCACATGCGTCTGCACCCGCATCTTCTTCTGTGTCATCCGCTCACATTCCTGCGACT

Fln Alignment:

AllPineV4_c12279___DFGLARLFSEDETHVSTRVAGTYGYMPPEYAMQGQLSVKADVYSFGVLLLEVITGRKNTDYNLSPEMQILLGWAWRSYDGGNIVQLIDPAIIETCDETQASRCIHVGLLCTQPESHLRPLMSTVNLMLSTDSVTLLPDPTKPAFVS
A9NQB9_______________DFGLARLFPDDETHVHTRVAGTYGYMAPEYAMLGQLSVKADVYSFGVVLLEIVSGRRNTDIRLPQEQQILLEWGWRLCNGENLLNMIDPTIVGCCPQEQALRCIQVGLLCVQADVVNRPAMSDVVLMLSANSMG-IPNPTKPAFVS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
409		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain