SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30268

Length: 1024 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene30268 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Kinase, putative n=1 Tax=Ricinus communis RepID=B9SDY6_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	l-type lectin-domain containing receptor kinase -like	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3		IPR001899	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3		IPR015706	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVC0

Fln msg: Distance to subject end: 140 aas, your sequence is shorter than subject: 340 - 636

Fln protein: RDFEFADIDDNHVGIDINSLISNMSATAAYRTGNGTVQTFNLKAQKSIQCWIDFDGAENRVNVSVVPGGMTKPDRPLISIQVKLSDVLLDYMYVGFSASTGLLSSAHRLLGWSFRMNGPAQDLELSNLPQITYAYSMVKTRRFRIGVSLAALTIMAVATLAAVHVIRRIRKSEVIEEWELECGPHRFPYNELKVATKGFRDKELLGFGGFGRVYKGVIPSTGLEVAVKRVSHESKQGVREFIAEIASIGRLRHRNLVPLQGWCRHKEELLLVYDYMPNGSLDKLLFDSTENMLSWAQRFRILKGVASALLYLHEEWEQTVVHRDVKASNVLLDEVLNART

Protein Length: 341

Fln nts: TTCGGGATTTTGAGTTTGCGGATATTGATGATAATCATGTGGGTATCGATATTAATAGTCTGATATCAAATATGTCTGCAACAGCTGCGTACAGAACTGGTAATGGGACAGTTCAGACATTTAATCTGAAAGCTCAGAAAAGCATTCAATGCTGGATAGATTTTGATGGTGCAGAGAATAGGGTTAATGTGAGTGTTGTACCTGGGGGGATGACCAAGCCTGATCGGCCATTGATCTCTATTCAGGTTAAGCTCTCGGATGTCCTTCTTGATTATATGTATGTGGGGTTTTCAGCATCAACAGGACTGCTTTCTAGTGCTCATCGCCTTCTCGGATGGAGTTTCAGGATGAATGGGCCTGCACAGGACCTTGAACTCTCCAATCTTCCTCAGATCACATATGCATATTCTATGGTGAAGACTAGAAGGTTCAGGATTGGGGTGTCATTGGCTGCTCTAACTATCATGGCTGTTGCAACTCTGGCTGCAGTTCATGTTATTAGGAGGATTAGAAAGAGTGAGGTGATTGAAGAATGGGAGCTTGAATGTGGGCCTCATAGATTTCCATACAATGAACTTAAAGTGGCCACAAAGGGTTTCAGGGACAAAGAGTTGCTGGGATTTGGAGGCTTTGGGAGGGTTTATAAAGGTGTTATTCCCAGCACTGGGCTGGAAGTTGCGGTGAAGCGGGTTTCTCATGAATCCAAACAAGGGGTGAGGGAATTCATTGCAGAAATTGCGAGCATTGGCCGGCTTCGACACAGGAACTTAGTTCCGCTTCAAGGTTGGTGTAGGCATAAGGAAGAGCTTCTGCTTGTGTATGATTACATGCCAAATGGTAGCCTTGACAAGCTCTTGTTTGACAGTACAGAGAATATGCTGAGTTGGGCGCAGAGGTTTAGAATTTTGAAGGGAGTTGCTTCCGCTTTGCTTTATCTTCATGAGGAATGGGAGCAGACAGTAGTCCATAGAGATGTCAAAGCAAGCAATGTGTTATTAGATGAAGTTTTGAATGCTAGGACATT

Fln Alignment:

AllPineV4_c12003___EFADIDDNHVGIDINSLISNMSATAAYRTGNGTVQTFNLKAQKSIQCWIDFDGAENRVNVSVVPGGMTKPDRPLISIQVKLSDVLLDYMYVGFSASTGLLSSAHRLLGWSFRMNGPAQDLELSNLPQITYAYSMVKTRRFRIGVSLAALTIMAVATLAAVHVIRRIRKSEVIEEWELECGPHRFPYNELKVATKGFRDKELLGFGGFGRVYKGVIPSTGLEVAVKRVSHESKQGVREFIAEIASIGRLRHRNLVPLQGWCRHKEELLLVYDYMPNGSLDKLLFDSTENMLSWAQRFRILKGVASALLYLHEEWEQTVVHRDVKASNVLLDEVLNAR
A9NVC0_______________EFNDPDGNHVGVDVNNLVSVQTETAGYWNGE-EFHELNLRSGRNIQAWIDYDHLQSRLDVTMTVVGLPRPQKPLISLQIDLHNVLQEKMYVGFSAATGLFMEDHYVLAWSFTTQGTAPPLDVSCLRSFANMYTEPLSRGFTVGVTVASLVLFLLAIAAAVF-LKRVIKRETIEEWEEEYWPHRFTYKELSIATSRFRDENVLGYGGFGMVYKGVLPSSGQEVAVKCITTEFTEGMKGFVAEISSMGRLRHRNLVQLRGWCRRHTQLFIVYDYMPNGSLDKLIFGNPTTVLPWHRRYAILKGVAAGLLYLHEQWEKRVVHRDIKSSNVLLDSELNGR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
604	75		25		0.996473
617	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain