SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30199

Length: 575 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene30199
ATGGGGAGTACAATTCAGTTAGTTCTAAAGTGTTAGACATGAAAAATGGAACAAGGGTGAATAGCTATTTTGGTCGCACATTTTCTAGGAAATGCGTTTAACCAAGGGAAATACTTTGTTAAAACTTCCAAAATATTGTTGTTTCATGCCTTCTTGAGGAACCCAGGTTAAGATACTGATAGAGAGACATGGATCCATTTGAATTTGTTAAATGCAGATGCATTCAGAGAAACGGAAGCGGTCAAAGACAAAGTCAAGGAATGAAGAAAGTCGTCAACCCAATGTCAAGTCTGAATCTATAGTTCCAGTCACTCCATTCAAGGGTGCACGTCTGGCATCTGCCTCTCGTAAATCTCCATATGAATCAGTTTCATCTAAACGTCCTGCAAAGCTGAGGAGAGTTAGTGAAAATGATGCCAGTATTGCTGCAGCAATTGTGAAGGTTGAAGATGAAGTAACTGATGAAACTGCAAAGGCAAAAGAAAATGCGGAGGAACTGAAACTTATGGTGAAAAATGCGTTTCTGGAGAAGTCAGATCTCTTCAATTCTGAGAACCTGAAAATGACAAGACATT

Ace file of the UniGene sp_v2.0_unigene30199 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os01g0872700 protein n=3 Tax=Oryza sativa RepID=Q5N739_ORYSJ	-	-	6.0e-14	47%
FL-Next	Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3	-	-	0.0	42%
Blast2go	5 -3 exoribonuclease 3-like	-	-	1.63649e-15	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	miRNA catabolic process	GO:0010587	Biological Process	1.63649e-15	60%
Blast2go	5'-3' exoribonuclease activity	GO:0004534	Molecular Function	1.63649e-15	60%
Blast2go	nucleus	GO:0005634	Cellular Component	1.63649e-15	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FQ03-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 232 aas, your sequence is shorter than subject: 191 - 763

Fln protein: WGVQFS*F*SVRHEKWNKGE*LFWSHIF*EMRLTKGNTLLKLPKYCCFMPS*GTQVKILIERHGSI*IC*MQMHSEKRKRSKTKSRNEESRQPNVKSESIVPVTPFKGARLASASRKSPYESVSSKRPAKLRRVSENDASIAAAIVKVEDEVTDETAKAKENAEELKLMVKNAFLEKSDLFNSENLKMTRH

Protein Length: 192

Fln nts: ATGGGGAGTACAATTCAGTTAGTTCTAAAGTGTTAGACATGAAAAATGGAACAAGGGTGAATAGCTATTTTGGTCGCACATTTTCTAGGAAATGCGTTTAACCAAGGGAAATACTTTGTTAAAACTTCCAAAATATTGTTGTTTCATGCCTTCTTGAGGAACCCAGGTTAAGATACTGATAGAGAGACATGGATCCATTTGAATTTGTTAAATGCAGATGCATTCAGAGAAACGGAAGCGGTCAAAGACAAAGTCAAGGAATGAAGAAAGTCGTCAACCCAATGTCAAGTCTGAATCTATAGTTCCAGTCACTCCATTCAAGGGTGCACGTCTGGCATCTGCCTCTCGTAAATCTCCATATGAATCAGTTTCATCTAAACGTCCTGCAAAGCTGAGGAGAGTTAGTGAAAATGATGCCAGTATTGCTGCAGCAATTGTGAAGGTTGAAGATGAAGTAACTGATGAAACTGCAAAGGCAAAAGAAAATGCGGAGGAACTGAAACTTATGGTGAAAAATGCGTTTCTGGAGAAGTCAGATCTCTTCAATTCTGAGAACCTGAAAATGACAAGACATT

Fln Alignment:

AllPineV4_c11796___PNVKSESIVPVTPFKGARLASASRKSPYESVSSKRPA--KLRRVSENDASIAAAIVKVEDEVTDETAKAKENAEELKLMVKNAFLEKSDLFNSE
Q9FQ03-2_____________PTVQPD-LVPVARFSGSRLASAPTPSPFQSNDGRSAPHQKVRRLSPG-SSVGAAIVDVENSLESDE---RENKEELKTKLKELIREKSDAFNSD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
253		66		33	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain