SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30173

Length: 952 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene30173

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SAM (and some other nucleotide) binding motif; Methyltransferase small; Tetratricopeptide-like helical [Medicago truncatula]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	s-adenosyl-l-methionine-dependent methyltransferase-like protein	-	-	66%

Source	InterPros	Term	Type	Identity
Sma3	Putative methylase	IPR004557	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Methyltransferase small	IPR007848	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVG1

Fln msg: W1: There is no M at the beginning,

Fln protein: PWLSLFLEDSDWRRDLGCHSALVAPVHTSQVSSNDQTRIRSLVSPPTLRRKSADIRLVGRHSEVYEPCDDSFALVDALLADRVHLEEVQPSLCLELGCGTGYVITSLALMLGEGAGIQYFATDISSAAIEVTKKTLEAHGVHAEVILTDLASGLDKRLAGTVDVLVVNPLMYLLLRRRLVAMELLLHGLVESMVVP*LTGY*QL*TTS*PWLSLRFYLVTLTANKPSEICLIMKQKGFASRIIVQRYTEEESLHVLKFWRDPLETTTDIGTSQPHLSSPWRLSCLPFWKNSRSI*

Protein Length: 296

Fln nts: CGTCTGACCTTGGCTGTCACTCTTTTTGGAAGATAGTGATTGGCGTCGTGACCTTGGCTGTCACTCAGCTCTTGTTGCTCCTGTGCATACATCCCAAGTTAGCAGCAACGACCAGACCAGGATCCGAAGTTTGGTTTCCCCCCCTACCTTACGTAGGAAGAGTGCAGACATTCGTCTTGTTGGGCGCCACTCAGAAGTTTATGAGCCCTGTGATGATTCATTTGCACTTGTAGATGCCCTGCTCGCTGATCGGGTTCATCTTGAGGAAGTTCAACCAAGCTTGTGTTTAGAACTCGGATGTGGGACTGGATATGTGATAACATCATTGGCACTTATGCTTGGGGAAGGCGCTGGGATCCAATACTTTGCTACTGACATTAGCTCTGCAGCTATTGAGGTTACAAAGAAGACTTTAGAAGCTCATGGTGTGCATGCAGAAGTAATTTTGACTGATCTTGCATCTGGTCTGGACAAACGTCTAGCTGGAACAGTGGATGTCCTTGTAGTCAACCCCCTTATGTACCTACTTCTGAGGAGGAGGTTGGTGGCAATGGAATTGCTGCTGCATGGGCTGGTGGAGAGCATGGTCGTACCGTGATTGACAGGATACTAGCAATTGTAGACAACGTCGTGACCTTGGCTGTCACTCAGGTTTTACCTTGTCACATTAACTGCAAATAAACCTTCTGAAATTTGTTTGATCATGAAACAGAAAGGATTTGCATCTCGAATTATAGTCCAGAGATATACTGAGGAAGAAAGTCTCCACGTGCTTAAATTCTGGCGTGATCCTCTGGAGACCACAACTGATATTGGAACAAGCCAGCCCCATCTATCTTCACCCTGGCGACTTTCTTGCCTACCATTTTGGAAGAACAGCCGAAGTATATGA___TTTCAATAGTGATGTCATTCCGTTCAGACAGTTTGACTTTCATGGGTTTTCAGGGTTTTG

Fln Alignment:

AllPineV4_c11707___ALVAPVHTSQVSSNDQTRIRSLVSPPTLRRKSADIRLVGRHSEVYEPCDDSFALVDALLADRVHLEEVQPSLCLELGCGTGYVITSLALMLGEGAGIQYFATDISSAAIEVTKKTLEAHGVHAEVILTDLASGLDKRLAGTVDVLVVNPLMYLLLRRRLVAMELLL-------HGLVESMVVP*LTGY*QL*TTS*PWLSLRFYLVTLTANKPSEICLIMKQKGFASRIIVQRYTEEESLHVLKFWRDPLETTTDIGTSQPHLSSPWRLSCLPFWKNS
A9NVG1_______________ALVAPVHTPQVSSN-HTKIQSLVSPSTLRRKSADIRLVGCHSEVYEPCDDSFALVDALLADRVHLEEVQPSLCLELGCGSGYVITSLALMLGEGTGIQYLATDINSAAIEVTKKTLEAHGVHAEVILTDLVSGLDKRLAGTVDVLVVNP-PYVPTSEEEVGGDGIAAAWAGGEHG---RTVIDRILAIVDNLLSSKGW----FYLVTLTANKPSEICLIMKQKGFASRIIVQRSTEEESLHVLKFWRDPLEITTDIGTSQPHLSSTWRFSRLAFWKNS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
729	75		25		0.996481
732			25	75	0.996481
733		75		25	0.996481
737	75	25			0.996481
741	66		33		0.997452
742		25		75	0.996479
743	75			25	0.996474
749	75			25	0.996477
750		25	75		0.996477

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain