SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30091

Length: 1373 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene30091 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative Ste-20 related kinase, 3'-partial [Oryza sativa Japonica Group]	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	24%
Blast2go	serine threonine protein	-	-	91%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR19

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 126 aas, your sequence is shorter than subject: 183 - 902

Fln protein: *TIRNGQRSRCHPATKLREPSVALSRVERQGPGW*PSPIRRSPCPAD*VEAIAI*APVCYRAADVAAAGDGGGFVQNSLQGGSIYFKGLILRGAISGSLAMKMGRKNYPASASDYKLLEEVGYGASATVYRAICLPMNEVVAVKCLDLDRCSSNLDDIRREAQTMSLIDHPNVIKAYWFICC*

Protein Length: 184

Fln nts: TTAAACAATAAGAAATGGTCAGCGCTCTCGCTGCCATCCTGCAACTAAATTGCGAGAGCCTTCTGTTGCGTTAAGCCGCGTCGAACGCCAAGGGCCCGGATGGTAACCGAGCCCAATCCGTCGATCGCCATGTCCGGCGGATTGAGTTGAAGCGATTGCGATTTGAGCACCAGTCTGTTACAGGGCAGCCGATGTTGCTGCTGCTGGCGATGGCGGTGGATTTGTCCAGAACAGTCTACAGGGGGGTTCAATATATTTCAAGGGTTTGATACTTAGAGGTGCGATTAGTGGTTCTCTTGCGATGAAAATGGGGAGGAAAAATTACCCTGCTTCGGCTTCTGATTATAAATTGCTGGAGGAGGTTGGGTATGGAGCGAGCGCCACCGTGTACAGGGCCATTTGCTTGCCTATGAACGAGGTCGTGGCCGTTAAGTGCCTGGATCTTGACAGATGCAGCAGTAATCTGGATGATATTCGTCGTGAGGCTCAAACAATGAGCTTAATAGATCATCCAAATGTAATCAAGGCATATTGGTTCATTTGTTGTTGACCGGTGCCTTTGGGTAGTAATGCCTTTTATGGCAGAAGGTTCATGCTTGCACATAATGAAAATAGCTTATCCAGATGGCTTTGAAGAGTATGCCATTGCTACAATTCTGAAGGAAACACTTAAAGCTCTGGAGTATCTTCATCGGCAAGGACATATTCATCGTGATGTGAAGGCTGGGAACATCCTCGTTGACTCTGGTGGTGCAGTTAAACTGGGTGACTTTGGTGTGTCAGCTTGTATGTTTGACACGGGTGACAGGCAGCGATCAAGAAACACTTTTGTGGGAACATGTTGGATGGCACCAGAGGTCTTACAGCCAGGCAATGGATATAATTTCAAGGCTGATATATGGTCACTTGGAATAACAGCATTGGAACTGGCACATGGTCATGCTCCATTCTCAAAATATCCTCCTATGAAGGTTCTGCTTATGACGATACAAAATGCACCACCTGGGCTTGATTATGATAGAGACAAAAAGTTCTCAAAGTCTTTCAAAGAAATGATTGCTATGTGCCTAGTGAAAGATCAAACAAAACGTCCAACTGCAGAGAAACTGTTGAAGCATTCATTTTTCAGGCAAGCAAAATCTCCGGAATATGTTGTTCGTAATCTTTTGCAAGGGCTTCCTCCCTTGTGGGAGCGTGTAAAAGCAATCCAACTCAAAGATGCTGCACAGCTTGCTTTGAAGAAAATGCCTTCTGCAGAGAAAGAAGCATTATCACAGGATGAGTATAAGCGAGGGGTAAGCGCATGGAATTTCGACATTGAGGATTTGAAAGCTCAGGCAGCATTGATTCAAGATGATGATGATGAGTCGTCA

Fln Alignment:

AllPineV4_c11434___VGYGASATVYRAICLPMNEVVAVKCLDL----DRCSSNLDDIRREAQTMSLIDHPNVIKAY
B8LR19_______________LGCGTFGTVYVGFNRETGDMCAMKEVPLVPDDSKSSESIKQLEQEINLLSGLEHPNIVQYY

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1169	75		25		0.996473
1177	25	75			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
8	21	TCA TCA TCA TCA TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain