SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30068

Length: 894 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene30068

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-dependent RNA polymerase n=2 Tax=Gossypium hirsutum RepID=B2B9K0_GOSHI	-	-	60%
FL-Next	sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice).	-	-	55%
Blast2go	rna-dependent rna polymerase	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA-dependent RNA polymerase, eukaryotic-type	IPR007855	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0DXS3

Fln msg: Separated hits, possible frame ERROR between 612 and 636, and possible frame ERROR between 728 and 737, Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 277 aas, your sequence is shorter than subject: 256 - 740

Fln protein: WLLSVDVIPYPLLIK*DMVVAKAL*LLILHSPYKLSLRPSMKKYVSENTNLDVLAWSKFRPCFLNRQIITLLSTLGVKDRNFEKMQEDTVKNLDKVLTNRNMALEVLQIMTVGETHNVLISMLSCGYLPNSEPYLSMILHAFRASKLLELRRKTRIFVPKGRCLMGCLDESRTLKYGEVFVQVSETPGNKQFHDTGLSAFAQNxxxxxxxxxSGKVIVAKNPCLHPGDVRVLSAVNTSKLHHxxxxVVFPQQGER*

Protein Length: 257

Fln nts: TGGCTGCTAAGTGTAGATGTGATACCGTACCCTCTGCTTATCAAATAAGATATGGTGGTTGCAAAGGCGTTGTAGCTGTTGATCCTGCACTCCCCATATAAACTCTCATTGCGGCCAAGCATGAAGAAATATGTCTCAGAAAATACTAACCTTGATGTTCTTGCTTGGTCAAAATTCCGACCTTGTTTCCTGAATCGCCAAATTATCACTCTGTTGTCTACTCTCGGAGTTAAGGATCGGAACTTTGAGAAGATGCAGGAAGACACAGTTAAAAACCTGGATAAAGTTTTGACCAACAGAAACATGGCCCTTGAAGTCCTTCAGATTATGACTGTGGGCGAGACTCACAATGTTCTTATAAGTATGCTTTCTTGTGGCTACTTGCCAAATTCAGAGCCATATCTGTCAATGATACTTCATGCATTTCGAGCATCGAAACTTTTAGAACTAAGACGGAAAACACGCATATTTGTTCCCAAGGGACGATGCTTGATGGGGTGCCTTGATGAAAGTAGAACGCTGAAGTATGGTGAAGTGTTTGTTCAAGTTTCTGAGACTCCGGGAAATAAGCAATTCCATGATACTGGGCTTTCTGCATTTGCACAAAATCCxxxxxxxxxxxxxxxxxxxxxxxxTTCAGGGAAAGTAATCGTGGCCAAAAACCCATGCCTTCACCCAGGTGATGTACGAGTCTTGTCTGCTGTAAACACATCCAAACTTCATCACAxxxxxxxxxTCGTAGTTTTCCCACAGCAAGGTGAAAGGTAAGTAGATAATGATTTTAGTTCATTATTTAAAACTAGTTTTCCATCTGATAGAAGTAAAACCATTTAATCGACCTAAGTTAAATAAATTGTTATTATTGGCCTGTGTTTTATTCAGTTAAATTCTGAGTG

Fln Alignment:

AllPineV4_c11358___SPYKLSLRPSMKKYVSENTNLDVLAWSKFRPCFLNRQIITLLSTLGVKDRNFEKMQEDTVKNLDKVLTNRNMALEVLQIMTVGETHNVLISMLSCGYLPNSEPYLSMILHAFRASKLLELRRKTRIFVPKGRCLMGCLDESRTLKYGEVFVQ-VSETPGNKQFHDTGLSAFAQNPxxxxxxxxSGKVIVAKNPCLHPGDVRVLSAVNTSKLHHMxxxVVFPQQGER*VDNDFS
Q0DXS3_______________SRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRATSGVNDNDRFTVTGKVVIAKNPxxxxxxxxTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMxxxVVFPQQGPRPHPNECS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain