SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30008

Length: 510 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene30008
CGTCGTGACCTTGGCTGTCACTGCACTCTGGACTGGGGACCCTGGGCGGTCACCGTGAATGACAAGCCATATCCGTGCGGCTCCGGCCAGGCGGACACCGGAGGGGACTTCGTGTTAGCCCCGGACGTGGACCACACCAATCCCAAGATACAGCAAGATTTGTCGGAGTGGATGAATTGGCTCAAGTCCAATGTCGGATTTGATGGCTGGAGGTTCGACTACGTCAACGGCTACGCTGCAAACCTGCTGAGCGGCTATATACAAAACACAACCCCCAATTTCGCAGTTGGGGAGATGTTGGACAGAGATCGCCAAAAAGTTGTTGACTTGGGTGCACAAAACGGGTGACCGCGCCTTCGCTTTCGATTTCCCTACCAGATATATCCTTGCGGAGGCATTTCAATTCAATGACCTCTCGCGCCTAAAGGATTCCGATGGAAAACCCGCTGGCATGATCGGCTTATTGCCCCAGAAGGCGGTCACCTTCATTGAAAATCACGACACCGCCCG

Ace file of the UniGene sp_v2.0_unigene30008

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-amylase n=1 Tax=Ipomoea nil RepID=Q8LP27_IPONI	-	-	5.00264e-43	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	alpha-amylase	-	-	0.0	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-amylase.	EC:3.2.1.1	-	0.0	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	75%
Blast2go	Metabolic pathways	01100		0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	response to gibberellin stimulus	GO:0009739	Biological Process	75%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	75%
Blast2go	alpha-amylase activity	GO:0004556	Molecular Function	75%
Blast2go	apoplast	GO:0048046	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 13	IPR006046	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Glycosyl hydrolase, family 13, subfamily, catalytic domain	IPR006589	-	-
Sma3	Alpha-amylase, C-terminal beta-sheet	IPR012850	-	-
Sma3	Alpha-amylase, plant	IPR013775	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLM4

Fln msg: Separated hits, possible frame ERROR between 303 and 314, Distance to subject end: 117 aas, your sequence is shorter than subject: 170 - 450

Fln protein: RRDLGCHCTLDWGPWAVTVNDKPYPCGSGQADTGGDFVLAPDVDHTNPKIQQDLSEWMNWLKSNVGFDGWRFDYVNGYAANLLSGYIQNTTPNFAVGEMLxxxxxKKLLTWVHKTGDRAFAFDFPTRYILAEAFQFNDLSRLKDSDGKPAGMIGLLPQKAVTFIENHDTA

Protein Length: 171

Fln nts: CGTCGTGACCTTGGCTGTCACTGCACTCTGGACTGGGGACCCTGGGCGGTCACCGTGAATGACAAGCCATATCCGTGCGGCTCCGGCCAGGCGGACACCGGAGGGGACTTCGTGTTAGCCCCGGACGTGGACCACACCAATCCCAAGATACAGCAAGATTTGTCGGAGTGGATGAATTGGCTCAAGTCCAATGTCGGATTTGATGGCTGGAGGTTCGACTACGTCAACGGCTACGCTGCAAACCTGCTGAGCGGCTATATACAAAACACAACCCCCAATTTCGCAGTTGGGGAGATGTTGGAxxxxxxxxxxxxCAAAAAGTTGTTGACTTGGGTGCACAAAACGGGTGACCGCGCCTTCGCTTTCGATTTCCCTACCAGATATATCCTTGCGGAGGCATTTCAATTCAATGACCTCTCGCGCCTAAAGGATTCCGATGGAAAACCCGCTGGCATGATCGGCTTATTGCCCCAGAAGGCGGTCACCTTCATTGAAAATCACGACACCGCCCG

Fln Alignment:

AllPineV4_c11219___LDWGPWAVTVNDKPYPCGSGQADTGGDFVLAPDVDHTNPKIQQDLSEWMNWLKSNVGFDGWRFDYVNGYAANLLSGYIQNTTPNFAVGEMLDxxxxKKLLTWVHKTGDRAFAFDFPTRYILAEAFQFNDLSRLKDSDGKPAGMIGLLPQKAVTFIENHDT
B8LLM4_______________LDWGPWAVCVNDNPYTCGSGQADTGGNFTGAPDIDHTNPAIQANLSEWMNWLKSHVGFDGWRFDFALGYEGKLLGIYAENTNPEFAVGEVWDxxxxQRLVDWVHSTGDRATTFDFTTKGILQEAVKSNELWRLKDSNGKPSGLIGVLPQKAVTFIDNHDT

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
381	80		20		0.995499
382			20	80	0.995499
403	25	75			0.996473
407	25	25		50	0.995533
438		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain