SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29994

Length: 2704 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene29994
ACGGTGCCAGTGTAACCCTGCAAATGGTCGAATTCGATGCTAAATAAAGCCGCTTTCGCCGTAATTTGCCGGACTAGGTTACACAGGCGAGCCCAGGCTCCTCCCTGCTTCCGTTTGATCTCTCATTTGCCCAGTCTAGCTCACATTTCCCCGGTTCTTGAAAGGTTTCTTTAGCTCCGGCCATCCGACCCGAGGTCGATCCGAGCGAGTTCAAGTCCGTGGCAGGAGCGTCGTTCTACAGTCCATAAGGGTCGTAGAACCGACTTTGCAATGAAAAGATCTGTTGTTCGTCGTGACCTTGGCTGTCATCATGCTGGCTTGGCTTTAGTCCTGGAGAATAAAATCGGCGGAGTTTTGCTTAGTTCAATACAGTCTGTTTTGCAAGAAAAGCAGGAGAATCTGTGACATGGGACTAGGAATGAGCTCTTTATATTATTTGGCTGATCTACTTTTCAGTTGCAATACCTGATTTTTCTTAATCGGTAAGCGTATCCGACGTGGCCCTTAGCTGGATATATAAAATTTGCAAAGACGGGGTCTGCTTGTTGTGTGGCCGCAAGGCCACAGGGTTCAAGGTTGGATAAGGATGGACGGTTGGCTACACTGCCAGAGATTCTTTCATCTCACCATGAGTATAAATCGCAGGCCGAAGATGTCACAGGCCCGGGAAATTGCATGCAATTTCAAAGGACCCTTTCATCGAACAGCAGAGGAAGCCGAGCCGCGAGCTTTCGTCATACGAACCATCAAAGCAATTTTTCTGGAAATGGTTCGGTTGATTCAAGCCCCTTGTCGGCCAGTTTTCGCGAGCCACAGTGGTTGAGCCCTCCCTTTCTGCCTGATCATGATGGAAACTCTGTTAATACTCCCTCAGATTCAGGTTTGAGCCCTTATATAACAGAAGCATCCTCCAAAGAGGAATACCCGTCAGCTGCCCCTTACTTCAATCCAAAGACACCGGAATCCTTTACACCCCCAATAAATACAGAGGACTGTTTCCAAAGACAATATAAAAGTCGGCCTGATCTGCCACAATGCTCAAAAAGCCAGCTAGCTTCATCACGGCGCCCATCAATCCGTAGTCGTTCTTTTTTCTCCAGGCGCTTGCACCATACTTCCAACAAACACCTTACCAGGCAAATCTCAGACAGTCGGATTCATGCGTTAAATTCACTTAGCAATAGCTCCATATCAGCACTGGATGGACGACACTCCTTCAAGTTGGCTGGTAGTAATGGCGACTCAACAGTGGGTTCACATGGAGGTGTCCCTGATTGGTGGTCCATGCAGACATTTTCAGATCTTGTAGCTTCCTCTAGAAGAGAGCGGTTCCGTTGGAGTGATGCAACAAGCCCTTCTGATTTTGGGTGGATTCCGGGCAGAGACAGCATGGATGGAGCTCTGGCCATGGAAAGGATCAGGGCCAAAAACACACATGCTACTTCCATGTCCTCCCAGGTGGAAGTTCAGACTTGCGGCATTTGCTCAAAGCTTGTATCACAAGAGTATATCTCTGTTGTTGCTGTGCTAGCTTGTGGGCATGTCTACCATCCAGAGTGTTTGGAGAAGACAACTTCTGAAGCTAATCAGCAAGATCCGTTATGCCCTGTATGTATTGCTCATGAAGAGATGCTCTCAAAGCGGATGCCATCTCCAGTAGAGCGAATTATCAGATCCAAAGGTGGTGGTTTAAAGGCTTACAGGTCACAGAGTCAATCATCTTCGAGAAACAAAATGTCAAGAATTGGTGTTGCAAATGATGATATTGTAGATCCTCAATTCTTTTCCGGTGAAATTCTTTTGTCTTGCAAAGATAGGTTGTCCATTGATAATGTTGTAAAGATGTCATCCAGCAAAATTGAAAAGGATTCGTTCAACAAATCTCTGTTTAGGCATTTTCCCTTGAGAGGAAAATCCAAGGAAGAACATACCCCAATTGAGGCTGGTTGTAATTTGTCAGGAACATCAAGGCATTCTGGTGAGAGTAGCTCAGGAAATGACTTCTCACTACGACATGCTAAGCATTCGAGTTCTTTTAGGTATTTCAGAAAATGGGTACATGAATGAAACTTCTCTGTTGAGGGGTCTATATTATTTTGTTTATATACTATTAGTTAGAAACTTTAGTTGCATATAATTTGCTAGGAAGCATCATTATGAAGATAATGTCGTTATGAATGTAATGGAAACAAAGGCCATCGAGAAAGTGATCTTCAAGCAGATCGTATAAGCCTCTGCGAAATGTGATCTTCAAGCTGATACTTAAAATGATGCTGAGATTCTTCCAGATGGCTGGGCTGTATATCTGACATTGCAGTTTTTTAAAGTTCTGTAACAAATTTCTTGGTGGGAGGCAAAGAGAACTTCCTTAATCTGCTCTCTCTCTCTCTCTCTAATCGGTTTATAAACTTGGACATGTAAACTGGTTATCAAAGAAAGTGATCTCTGAAAGTATTACCTAACCAATAACATTCATGCTATTCGAATTGGATATGGTTGCACTGCTCTAGTGCAGGCTGGAACCTGCAACGCTGATGGTAGGTAAAATACAAATTCAGCATGCAGTTTCCATGAAATTTTGTCCTGTCCTCTTTGATACTCGGAGAACCTTCGGTGCCCTAGAGGAGTTACTTGTTTGCATTTTTTGCATGTTTATTGGGAAAATCTGGACTTCTGTAACTACTGACAATTTTAAAGAAACATA

Ace file of the UniGene sp_v2.0_unigene29994 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9R7Z4_RICCO	-	-	1.0e-29	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	47%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX53

Fln msg:

Fln protein: MQFQRTLSSNSRGSRAASFRHTNHQSNFSGNGSVDSSPLSASFREPQWLSPPFLPDHDGNSVNTPSDSGLSPYITEASSKEEYPSAAPYFNPKTPESFTPPINTEDCFQRQYKSRPDLPQCSKSQLASSRRPSIRSRSFFSRRLHHTSNKHLTRQISDSRIHALNSLSNSSISALDGRHSFKLAGSNGDSTVGSHGGVPDWWSMQTFSDLVASSRRERFRWSDATSPSDFGWIPGRDSMDGALAMERIRAKNTHATSMSSQVEVQTCGICSKLVSQEYISVVAVLACGHVYHPECLEKTTSEANQQDPLCPVCIAHEEMLSKRMPSPVERIIRSKGGGLKAYRSQSQSSSRNKMSRIGVANDDIVDPQFFSGEILLSCKDRLSIDNVVKMSSSKIEKDSFNKSLFRHFPLRGKSKEEHTPIEAGCNLSGTSRHSGESSSGNDFSLRHAKHSSSFRYFRKWVHE*

Protein Length: 465

Fln nts: ACGGTGCCAGTGTAACCCTGCAAATGGTCGAATTCGATGCTAAATAAAGCCGCTTTCGCCGTAATTTGCCGGACTAGGTTACACAGGCGAGCCCAGGCTCCTCCCTGCTTCCGTTTGATCTCTCATTTGCCCAGTCTAGCTCACATTTCCCCGGTTCTTGAAAGGTTTCTTTAGCTCCGGCCATCCGACCCGAGGTCGATCCGAGCGAGTTCAAGTCCGTGGCAGGAGCGTCGTTCTACAGTCCATAAGGGTCGTAGAACCGACTTTGCAATGAAAAGATCTGTTGTTCGTCGTGACCTTGGCTGTCATCATGCTGGCTTGGCTTTAGTCCTGGAGAATAAAATCGGCGGAGTTTTGCTTAGTTCAATACAGTCTGTTTTGCAAGAAAAGCAGGAGAATCTGTGACATGGGACTAGGAATGAGCTCTTTATATTATTTGGCTGATCTACTTTTCAGTTGCAATACCTGATTTTTCTTAATCGGTAAGCGTATCCGACGTGGCCCTTAGCTGGATATATAAAATTTGCAAAGACGGGGTCTGCTTGTTGTGTGGCCGCAAGGCCACAGGGTTCAAGGTTGGATAAGGATGGACGGTTGGCTACACTGCCAGAGATTCTTTCATCTCACCATGAGTATAAATCGCAGGCCGAAGATGTCACAGGCCCGGGAAATTGC_-_ATGCAATTTCAAAGGACCCTTTCATCGAACAGCAGAGGAAGCCGAGCCGCGAGCTTTCGTCATACGAACCATCAAAGCAATTTTTCTGGAAATGGTTCGGTTGATTCAAGCCCCTTGTCGGCCAGTTTTCGCGAGCCACAGTGGTTGAGCCCTCCCTTTCTGCCTGATCATGATGGAAACTCTGTTAATACTCCCTCAGATTCAGGTTTGAGCCCTTATATAACAGAAGCATCCTCCAAAGAGGAATACCCGTCAGCTGCCCCTTACTTCAATCCAAAGACACCGGAATCCTTTACACCCCCAATAAATACAGAGGACTGTTTCCAAAGACAATATAAAAGTCGGCCTGATCTGCCACAATGCTCAAAAAGCCAGCTAGCTTCATCACGGCGCCCATCAATCCGTAGTCGTTCTTTTTTCTCCAGGCGCTTGCACCATACTTCCAACAAACACCTTACCAGGCAAATCTCAGACAGTCGGATTCATGCGTTAAATTCACTTAGCAATAGCTCCATATCAGCACTGGATGGACGACACTCCTTCAAGTTGGCTGGTAGTAATGGCGACTCAACAGTGGGTTCACATGGAGGTGTCCCTGATTGGTGGTCCATGCAGACATTTTCAGATCTTGTAGCTTCCTCTAGAAGAGAGCGGTTCCGTTGGAGTGATGCAACAAGCCCTTCTGATTTTGGGTGGATTCCGGGCAGAGACAGCATGGATGGAGCTCTGGCCATGGAAAGGATCAGGGCCAAAAACACACATGCTACTTCCATGTCCTCCCAGGTGGAAGTTCAGACTTGCGGCATTTGCTCAAAGCTTGTATCACAAGAGTATATCTCTGTTGTTGCTGTGCTAGCTTGTGGGCATGTCTACCATCCAGAGTGTTTGGAGAAGACAACTTCTGAAGCTAATCAGCAAGATCCGTTATGCCCTGTATGTATTGCTCATGAAGAGATGCTCTCAAAGCGGATGCCATCTCCAGTAGAGCGAATTATCAGATCCAAAGGTGGTGGTTTAAAGGCTTACAGGTCACAGAGTCAATCATCTTCGAGAAACAAAATGTCAAGAATTGGTGTTGCAAATGATGATATTGTAGATCCTCAATTCTTTTCCGGTGAAATTCTTTTGTCTTGCAAAGATAGGTTGTCCATTGATAATGTTGTAAAGATGTCATCCAGCAAAATTGAAAAGGATTCGTTCAACAAATCTCTGTTTAGGCATTTTCCCTTGAGAGGAAAATCCAAGGAAGAACATACCCCAATTGAGGCTGGTTGTAATTTGTCAGGAACATCAAGGCATTCTGGTGAGAGTAGCTCAGGAAATGACTTCTCACTACGACATGCTAAGCATTCGAGTTCTTTTAGGTATTTCAGAAAATGGGTACATGAATGA___AACTTCTCTGTTGAGGGGTCTATATTATTTTGTTTATATACTATTAGTTAGAAACTTTAGTTGCATATAATTTGCTAGGAAGCATCATTATGAAGATAATGTCGTTATGAATGTAATGGAAACAAAGGCCATCGAGAAAGTGATCTTCAAGCAGATCGTATAAGCCTCTGCGAAATGTGATCTTCAAGCTGATACTTAAAATGATGCTGAGATTCTTCCAGATGGCTGGGCTGTATATCTGACATTGCAGTTTTTTAAAGTTCTGTAACAAATTTCTTGGTGGGAGGCAAAGAGAACTTCCTTAATCTGCTCTCTCTCTCTCTCTCTAATCGGTTTATAAACTTGGACATGTAAACTGGTTATCAAAGAAAGTGATCTCTGAAAGTATTACCTAACCAATAACATTCATGCTATTCGAATTGGATATGGTTGCACTGCTCTAGTGCAGGCTGGAACCTGCAACGCTGATGGTAGGTAAAATACAAATTCAGCATGCAGTTTCCATGAAATTTTGTCCTGTCCTCTTTGATACTCGGAGAACCTTCGGTGCCCTAGAGGAGTTACTTGTTTGCATTTTTTGCATGTTTATTGGGAAAATCTGGACTTCTGTAACTACTGACAATTTTAAAGAAACATA

Fln Alignment:

AllPineV4_c11182___MQFQRTLSSNSRGSRAASFRHTNHQSNFSGNGSVDSSPLSASFREPQWLSPPFLPDHDGNSVNTPSDSGLSPYITEASSKEEYPSAAPYFNPKTPESFTPPINTEDCFQRQYKSRPDLPQCSKSQLAXXXXXXXXXXXXXXXRLHHTSNKHLTRQISDSRIHXXXXXXXXXXXXLDGRHSFKLAGSNGDSTVGSHGGVPDWWSMQTFSDLVASSRRERFRWSDATSPSDFGWIPGRDSMDGA-LAMERIRAKNTHATSMSSQVEVQTCGICSKLVSQEY-ISVVAVLACGHVYHPECLEKTTSEANQQDPLCPVCIAHEEMLSKRMPSPVERIIRSKGGGLKAYXXXXXXXXRNKMSRIGVANDDIVDPQFFSGEILLSCKDRLSIDNVVKMSSSKIEKDSFNKSLF-RHFPLRGKSKEEHTPIEAGCNLXXXXXXXXXXXXGNDFSLRHAKHSSSFRYFRKWVHE
A9NX53_______________MQFQRNLSSNSRGSRVASFRHTNHQSNFSGNGSVDSSPLSASFREPQWLSSPLLPDHDGNSVNTPSDSVLSPYITEASSKEEYPSAVPYFNPKTPESFTPSLNTEDCFQREYKSQPDLPQCSKSQLASSRRPSIRSRSFFSRRLHHTSNKHLTRQISDSRIHALNSLNSSSISALDGRHSFKLAGSNGDSTVGSHGGVPDWWSMQTFSDLVASSRRERFRWSDATSPSDFGWIPGRESMDGASLAMERIRAKNAHAASTSSQVEVQTCGICSKLLSQEYHLSVVAVLACGHVYHPECLEKTTSEANQQDPSCPLCIASEEMLSKRLPSPVERIIRSKGGGLRAYRSQSQSSTRNKMSRIGVANDDIVDPQFFSGEILLSCKDRLSIDNVVKLSSSKIEKDSFNKSLFRRHFSLRGKSKEEHTTVEAGCKLSGTSRHSGESSTGNDFSLQHAKHSGSFRYFRKWVHE

SNPs (tot: 105)

Position	A %	C %	G %	T %	Probability
986	16		83		0.994512
987	16			83	0.994512
989			16	83	0.994512
990		83		16	0.994512
1044	6	81	12		0.999943
1045	18			81	1.0
1047	81		6		0.999943
1053			20	80	1.0
1054	6	13		80	0.999961
1059		85	14		0.999981
1067	14		85		0.999981
1068	85	14			0.999981
1302		20		80	0.995493
1398		77	22		0.999999
1400		77	22		0.999999
1401	22			77	0.999999
1403	22			77	0.999999
1404			22	77	0.999999
1406		20		80	0.999996
1412	80			20	0.999996
1413	80	20			0.999996
1414	18		81		0.999994
1416			18	81	0.999994
1419	83		16		0.999991
1529	16	83			0.999991
1639		77		22	0.999999
1642		81	18		0.999994
1649		20	80		0.999996
1650	80	20			0.999996
1651	20			80	0.999996
1652	20			80	0.999996
1654	80		20		0.999996
1657		20	80		0.999996
1658	20		80		0.999996
1661	20	80			0.999996
1744			14	85	0.993533
1745		14		85	0.993533
1746			14	85	0.993533
1748	14		14	71	0.984338
1767		80	20		0.995493
1768	20		80		0.995493
1772	20			80	0.995493
1774	20			80	0.995493
1775			20	80	0.995493
1776		20		80	0.995493
1777		20	80		0.995493
1778	20		80		0.995493
1781			16	83	0.994516
1783		16	83		0.994516
1785	83	16			0.994516
1789	83	16			0.994516
1815		33		66	0.997457
1817	33			66	0.997453
1818	33			66	0.997453
1819	33		66		0.997452
1820	33		66		0.997452
1823			75	25	0.996474
2121		90	10		0.90298
2122	10			90	0.90298
2123		90	10		0.90298
2126	10		90		0.90298
2130		10		90	0.90298
2131		10	90		0.90298
2132	10			90	0.90298
2135		90	10		0.90298
2136		90		10	0.90298
2137	90	10			0.90298
2142	10			90	0.90298
2144		90	10		0.90298
2265		87	12		0.992554
2268			87	12	0.992554
2269			12	87	0.992554
2271		12		87	0.992554
2272	12			87	0.992554
2277		87	12		0.992554
2278			12	87	0.992554
2279			87	12	0.992554
2280	87	12			0.992554
2283	87		12		0.992554
2284	87		12		0.992554
2285		12	75	12	0.975346
2286			25	75	1.0
2289	85		14		0.993533
2290	14			85	0.993533
2299			14	85	0.993533
2300	85		14		0.993533
2301	85			14	0.993533
2302		14		85	0.993533
2304		14		85	0.993533
2305	85		14		0.993533
2307	85	14			0.993533
2429		50		50	1.0
2430		50	50		1.0
2433		50		50	1.0
2435	50		50		1.0
2437	50	50			1.0
2442	50			50	1.0
2443		50	50		1.0
2446	50	50			1.0
2448	50	50			1.0
2449			50	50	1.0
2450	50	50			1.0
2451		50		50	1.0
2508	33	66			1.0
2523	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
311	328	AG AG AG AG AG AG AG AG AG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain