SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29881

Length: 2188 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene29881
CGTCGTGACCTTGGCTGTCACTCAATTAACGCAGTTCATTTTTGTAAGGGTGGGTCACGCCTGGCCACTCACCTAAATGTGTATTTAGCAGCTCAAGGTTTTCATTGGCATTGCAGGAGGTACTGGGTCTCATCGGCAGCAATGGCTTCAGCGGCGCTTGCAGCGTCGTCCACAGTCGGAATCCAGGCTTACAACATTTCGGCCACCCGACCCAACGAACAATCAAGGCCATCGTCTTCGATCTCACTAGCGGCGGCACCAGCCAGGCCCTTCTTGCAATGCCGGCACTCAATCTCTCGACCTCACGCCGCTGCTGGCACAGGATCGCTGTTCTCGTCATGGTGGGGGAGGCAGCAAGAGATCCAGTTGCAGAAACGACCATTATTCGCGCCGTTAGAAGGCTTGCGACACCGCCGCCCCACCAACGCTCCGCCCGCTGGGAGGCCGCGCGCTTCCTCGGAGGTGGCGCCTCCCCCAGCGCCGCCAGTGCAGCCATGGCAGGGCGCGGCGCTAAAGCCTCTGGCGGCGTCGATCGCCACCGGTGTGCTCCTGTGGCTCGTGCCGGCACCAGCGGGGGTGACGAAAAACGCTTGGCAGCTGCTGGCGATATTCCTGGCCACGATCGTGGGGATCATTACGCAGCCGTTGCCCCTGGGGGCCGTGGCACTGATGGGCCTCGGTGCTGCGGTGCTCACTAAAACCCTAACCTTCGCTGCTGCGTTTTCGGCTTTCGGCGACCAGATTCCATGGCTTATCGCGCTCGCTTTCTTCTTCGCCCGTGGCTTCATCAAGACGGGGCTCGGCAACCGCGTGGCCTACCAGTTCGTGGCTCTTTTCGGGAGCTCGTCATTAGGGTTGGGGTACAGTCTCGTGTTCAGCGAGGCGCTGCTCGCCCCGGCGATCCCTTCCGTCTCCGCCCGCGCCGGTGGCATCTTTTTGCCTCTCGTGAAGTCTCTCTGCGTGGCCTGCGGAAGTAACGTCGGTGACGGGACGGAGCGACGGCTGGGATCATGGCTCATGCTCACCTGCTTCCAGACGTCCGTGATTTCCTCTGCCATGTTCTTGACGGCCATGGCAGCTAATCCCCTGAGTGTGAATCTTGCCGCAGGCGCCATTGGCCAGACGATCGGGTGGACGGATTGGGCAGTGGCAGCGCTGGTGCCGGGTCTGGTGTCTCTGATCGTTGTTCCGCTTCTTCTTTATGTGATATATCCACCCAGTGTCAAGAGCAGCCCCGATGCGCCGAAGCTCGCGAGGGAAAAGCTGCAGAAGATGGGGCCGATGACCAAGAATGAAATCATCATGAGCGGCACGCTACTGGTCACGGTGGGTCTTTGGATATTTGGGGGAATGCTGAAGGTGGATGCTGTCACTGCAGCGATCCTTGGTTTGTCTGTTCTACTCTGCACAGGCGTTGTGACATGGAAGGAGTGCTTGGCTGAATCAGTAGCGTGGGACACTCTTACATGGTTTGCTGCACTTATTGCAATGGCAGGCTATCTAAACAAATATGGCCTTATTTCATGGTTTAGCCAGACTGTTGTGAAGGTTGTTGGTGGACTTGGTCTGTCATGGCAACTTTCTTTTGGAATATTGGTATTGTTGTACTTTTATTCTCACTACTTCTTTGCAAGTGGTGCAGCACATATTGGGGCAATGTTTACTGCCTTTTTATCCGTCGCAAGTGCTCTAGGGACCCCACCTTTATTTGGGGCAATGGTTCTTTCTTTCCTTTCAAATCTTATGGGAGGCCTTACACATTATGGTATTGGATCAGCACCTGTTTTCTATGGAGCTAACTATGTACCTTTGGCTCAATGGTGGGGTTATGGCTTCCTCATCTCTATAGTGAACATCGTTATTTGGCTTGGACTTGGAGGAGTGTGGTGGAAAGCATTGGGCTTATGGTAATTTACTAACTTGTTGAAACTACGAGCCGCACTAAAAAGGAAATAATCAATATTACAAAGGTTAGGAAATCTAGAACATGTCAAAATATCTACGAGTTTGGTCCCAATTTTCAGTTGTTGACTGAGAGCTATTCTTGTGTTTCTCCCATCTAATTCTACGGTGGGTCCGGGCAAAAGGTATTGCAATAATGTTGATTTTGTAACCAGCGAATCATTCTTTTGGGATAAAATATATAGTTTTTACCGTTAGAAAATGTGAAATTCATAATTTTTTATAC

Ace file of the UniGene sp_v2.0_unigene29881 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	2-oxoglutarate/malate translocator n=3 Tax=Spermatophyta RepID=B9GF08_POPTR	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	2-oxoglutarate malate translocator	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	oxaloacetate transport	GO:0015729	Biological Process	93%
Blast2go	alpha-ketoglutarate transport	GO:0015742	Biological Process	93%
Blast2go	response to nematode	GO:0009624	Biological Process	93%
Blast2go	oxaloacetate transmembrane transporter activity	GO:0015131	Molecular Function	93%
Blast2go	alpha-ketoglutarate transmembrane transporter activity	GO:0015139	Molecular Function	93%
Blast2go	mitochondrion	GO:0005739	Cellular Component	93%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	93%
Blast2go	membrane	GO:0016020	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sodium/sulphate symporter	IPR001898	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVU0

Fln msg:

Fln protein: MASAALAASSTVGIQAYNISATRPNEQSRPSSSISLAAAPARPFLQCRHSISRPHAAAGTGSLFSSWWGRQQEIQLQKRPLFAPLEGLRHRRPTNAPPAGRPRASSEVAPPPAPPVQPWQGAALKPLAASIATGVLLWLVPAPAGVTKNAWQLLAIFLATIVGIITQPLPLGAVALMGLGAAVLTKTLTFAAAFSAFGDQIPWLIALAFFFARGFIKTGLGNRVAYQFVALFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTERRLGSWLMLTCFQTSVISSAMFLTAMAANPLSVNLAAGAIGQTIGWTDWAVAALVPGLVSLIVVPLLLYVIYPPSVKSSPDAPKLAREKLQKMGPMTKNEIIMSGTLLVTVGLWIFGGMLKVDAVTAAILGLSVLLCTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKVVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPLFGAMVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLAQWWGYGFLISIVNIVIWLGLGGVWWKALGLW*

Protein Length: 591

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTAACGCAGTTCATTTTTGTAAGGGTGGGTCACGCCTGGCCACTCACCTAAATGTGTATTTAGCAGCTCAAGGTTTTCATTGGCATTGCAGGAGGTACTGGGTCTCATCGGCAGCA_-_ATGGCTTCAGCGGCGCTTGCAGCGTCGTCCACAGTCGGAATCCAGGCTTACAACATTTCGGCCACCCGACCCAACGAACAATCAAGGCCATCGTCTTCGATCTCACTAGCGGCGGCACCAGCCAGGCCCTTCTTGCAATGCCGGCACTCAATCTCTCGACCTCACGCCGCTGCTGGCACAGGATCGCTGTTCTCGTCATGGTGGGGGAGGCAGCAAGAGATCCAGTTGCAGAAACGACCATTATTCGCGCCGTTAGAAGGCTTGCGACACCGCCGCCCCACCAACGCTCCGCCCGCTGGGAGGCCGCGCGCTTCCTCGGAGGTGGCGCCTCCCCCAGCGCCGCCAGTGCAGCCATGGCAGGGCGCGGCGCTAAAGCCTCTGGCGGCGTCGATCGCCACCGGTGTGCTCCTGTGGCTCGTGCCGGCACCAGCGGGGGTGACGAAAAACGCTTGGCAGCTGCTGGCGATATTCCTGGCCACGATCGTGGGGATCATTACGCAGCCGTTGCCCCTGGGGGCCGTGGCACTGATGGGCCTCGGTGCTGCGGTGCTCACTAAAACCCTAACCTTCGCTGCTGCGTTTTCGGCTTTCGGCGACCAGATTCCATGGCTTATCGCGCTCGCTTTCTTCTTCGCCCGTGGCTTCATCAAGACGGGGCTCGGCAACCGCGTGGCCTACCAGTTCGTGGCTCTTTTCGGGAGCTCGTCATTAGGGTTGGGGTACAGTCTCGTGTTCAGCGAGGCGCTGCTCGCCCCGGCGATCCCTTCCGTCTCCGCCCGCGCCGGTGGCATCTTTTTGCCTCTCGTGAAGTCTCTCTGCGTGGCCTGCGGAAGTAACGTCGGTGACGGGACGGAGCGACGGCTGGGATCATGGCTCATGCTCACCTGCTTCCAGACGTCCGTGATTTCCTCTGCCATGTTCTTGACGGCCATGGCAGCTAATCCCCTGAGTGTGAATCTTGCCGCAGGCGCCATTGGCCAGACGATCGGGTGGACGGATTGGGCAGTGGCAGCGCTGGTGCCGGGTCTGGTGTCTCTGATCGTTGTTCCGCTTCTTCTTTATGTGATATATCCACCCAGTGTCAAGAGCAGCCCCGATGCGCCGAAGCTCGCGAGGGAAAAGCTGCAGAAGATGGGGCCGATGACCAAGAATGAAATCATCATGAGCGGCACGCTACTGGTCACGGTGGGTCTTTGGATATTTGGGGGAATGCTGAAGGTGGATGCTGTCACTGCAGCGATCCTTGGTTTGTCTGTTCTACTCTGCACAGGCGTTGTGACATGGAAGGAGTGCTTGGCTGAATCAGTAGCGTGGGACACTCTTACATGGTTTGCTGCACTTATTGCAATGGCAGGCTATCTAAACAAATATGGCCTTATTTCATGGTTTAGCCAGACTGTTGTGAAGGTTGTTGGTGGACTTGGTCTGTCATGGCAACTTTCTTTTGGAATATTGGTATTGTTGTACTTTTATTCTCACTACTTCTTTGCAAGTGGTGCAGCACATATTGGGGCAATGTTTACTGCCTTTTTATCCGTCGCAAGTGCTCTAGGGACCCCACCTTTATTTGGGGCAATGGTTCTTTCTTTCCTTTCAAATCTTATGGGAGGCCTTACACATTATGGTATTGGATCAGCACCTGTTTTCTATGGAGCTAACTATGTACCTTTGGCTCAATGGTGGGGTTATGGCTTCCTCATCTCTATAGTGAACATCGTTATTTGGCTTGGACTTGGAGGAGTGTGGTGGAAAGCATTGGGCTTATGGTAA___TTTACTAACTTGTTGAAACTACGAGCCGCACTAAAAAGGAAATAATCAATATTACAAAGGTTAGGAAATCTAGAACATGTCAAAATATCTACGAGTTTGGTCCCAATTTTCAGTTGTTGACTGAGAGCTATTCTTGTGTTTCTCCCATCTAATTCTACGGTGGGTCCGGGCAAAAGGTATTGCAATAATGTTGATTTTGTAACCAGCGAATCATTCTTTTGGGATAAAATATATAGTTTTTACCGTTAGAAAATGTGAAATTCATAATTTTTTATAC

Fln Alignment:

AllPineV4_c10817___TVGIQAYNISATRPNE---QXXXXXXXXXXXXXXXPFLQCRHSISRPHAAAGTGSLFSSWWGRQQEIQLQKRPLFAPLEGLRHRRPTNAPPAGXXXXXXXXXXXXXXXXXXXXXXA--LKPLAASIATGVLLWLVPAPAGVTKNAWQLLAIFLATIVGIITQXXXXXXXXXXXXXXXXLTKTLTFAAAFSAFGDQIPWLIALAFFFARGFIKTGLGNRVAYQFVAXXXXXXXXXXXXLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTERRLGSWLMLTCFQTSVISSAMFLTAMAANPLSVNLAAGAIGQTIGWTDWAVAAXXXXXXXXXXXXXXXXXXXXXXVKSSPDAPKLAREKLQKMGPMTKNEIIMSGTLLVTVGLWIFGGMLKVDAVTAAILGLSVLLCTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKVVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPLFGAMVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLAQWWGYGFLISIVNIVIWLGLGGVWWKALGLW
A9NVU0_______________TVGIRAPHISAVQLNHHHHRSPPLSSIALAAAPARPFLQCRDSISRPHAAAGRNSLVSLWWGRQQKIQEQKRPLFAPLEGLRRRRPVKAPPTASPRASSAAVTPPPPAPPAQPWQGAALKPLAASIATGVIMWLVPAPAGVTKNAWQLLAIFLATIVGIITQPLPLGAVALMGLGAAVLTKTLTFAAAFSAFGDQIPWLIALAFFFARGFIKTGLGNRVAYQFVALFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTEGRLGSWLMLTCFQTSVISSAMFLTAMAANPLSVNLAASAIGQTIGWTDWAVAALVPGLVSLIVVPLLLYVIYPPSVKSSPDAPKLAREKLQKMGPMTKNEIIMSGTLLVTVGLWIFGGMLKVDAVTAAILGLSVLLCTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKVVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPLFGAMVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLAQWWGYGFLISVVNIVIWLGLGGVWWKVLGLW

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1622		25		75	0.996474
1773		40	60		1.0
1789		16	83		0.994512
1791	16		83		0.994512
1792	16	83			0.994512
1844			66	33	1.0
1894	14		85		0.993533
1917		28		71	1.0
2079	33		66		1.0
2167	66	33			0.997476
2168	66	33			0.997476
2171			33	66	0.997471
2174	66	33			0.997471
2177			33	66	0.997476
2178	33		66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain