SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29811

Length: 431 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene29811
ATGGGGAACAGAATTTATGGCAACACTGTCAATTGCCCTTCAATATTACATACACATGAGATTAAACAATGATCCTGGTTGGCGAAATATCAAGGTCATTCTCTCTGATGCAAATGTTCCGGGTGAAGGTGAGCACAAAGTCATGTCATACATTCGCCTGCAAAGAAATCTTGCAGGTTTTGATCCAAATACTAGGCATTGCTTATATGGGTTGGATGCTGATCTAATCATGTTAGCATTGTCTACTCATGAGGTGCACTTCTCTATTTTGAGAGAGATTGTGTCTATGCCTGGGCAACAAGACAAATGCTTCCTTTGTGGTCAGATTGGTCATTTAGCAGCTGCATGTGAAGGACAGCCAAAAAGAAAGCATGGAGATCTTGATGAGAAAGGTGATGAACTTAATGTTCCTAAAAAGCCTTATCAGTTTG

Ace file of the UniGene sp_v2.0_unigene29811

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	5'->3' exoribonuclease, putative n=1 Tax=Ricinus communis RepID=B9R871_RICCO	-	-	85%
FL-Next	Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3	-	-	78%
Blast2go	5 -3 exoribonuclease	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	miRNA catabolic process	GO:0010587	Biological Process	89%
Blast2go	binding	GO:0005488	Molecular Function	89%
Blast2go	5'-3' exoribonuclease activity	GO:0004534	Molecular Function	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	5'-3' exoribonuclease 2	IPR017151	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FQ03-2

Fln msg: Distance to subject end: 459 aas, your sequence is shorter than subject: 143 - 763

Fln protein: WGTEFMATLSIALQYYIHMRLNNDPGWRNIKVILSDANVPGEGEHKVMSYIRLQRNLAGFDPNTRHCLYGLDADLIMLALSTHEVHFSILREIVSMPGQQDKCFLCGQIGHLAAACEGQPKRKHGDLDEKGDELNVPKKPYQF

Protein Length: 144

Fln nts: ATGGGGAACAGAATTTATGGCAACACTGTCAATTGCCCTTCAATATTACATACACATGAGATTAAACAATGATCCTGGTTGGCGAAATATCAAGGTCATTCTCTCTGATGCAAATGTTCCGGGTGAAGGTGAGCACAAAGTCATGTCATACATTCGCCTGCAAAGAAATCTTGCAGGTTTTGATCCAAATACTAGGCATTGCTTATATGGGTTGGATGCTGATCTAATCATGTTAGCATTGTCTACTCATGAGGTGCACTTCTCTATTTTGAGAGAGATTGTGTCTATGCCTGGGCAACAAGACAAATGCTTCCTTTGTGGTCAGATTGGTCATTTAGCAGCTGCATGTGAAGGACAGCCAAAAAGAAAGCATGGAGATCTTGATGAGAAAGGTGATGAACTTAATGTTCCTAAAAAGCCTTATCAGTTTG

Fln Alignment:

AllPineV4_c10566___GTEFMATLSIALQYYIHMRLNNDPGWRNIKVILSDANVPGEGEHKVMSYIRLQRNLAGFDPNTRHCLYGLDADLIMLALSTHEVHFSILREIVSMPGQQDKCFLCGQIGHLAAACEGQPKRKHGDLDEKGDELNVPKKPYQF
Q9FQ03-2_____________GTEFMGVLSIALQYYVHLRLNHDVGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLGLATHEVHFSILREVVYTPGQQERCFLCGQMGHFASNCEGKPKKRAGESDEKGDGNDFVKKPYQF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain