SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29794

Length: 1794 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene29794 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin:hydrogen symporter, putative n=1 Tax=Ricinus communis RepID=B9S6X0_RICCO	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	uncharacterized transporter ybr287w-like	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Auxin efflux carrier	IPR004776	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL56

Fln msg:

Fln protein: MAFWDLLTVASMPVVKILLISGLGAVLSTQYVGVLTEACLKHMNKVIFVVFTPALMFASLAQSVTFEDLISWWSMPVNVFLTYLFGAILGWTVVKITKPPEYLKGIVVANCCAGNMGNLLVIVVPALCQERGSPFGEPSACQVTGTAYASFSLALGSVFVWIYAYSLIRSSSQIHEEREIENGLDETVANIDYLDDEKIPNVDYLNAGETSKLLYTVQIIPQVPCSGRDNPSDKQNASSMVAGNSSSEKQSCFLAWFRKVKQYMDETGHLILEVLIAPPTVGVIAGFIVGAISPAKALIVGASAPLRVLQDSISLLGDGAIPGIILLMGGHLIKGLSSSKLRPVTIVLIICVKFALLPVIGIFVVKGASHLGLLPADPLYHYVLMVQYTVPPAMSIGTMAQLFNVGEQDCSVLFLWTYLWAAFAVTFWSTVYMWILLS*

Protein Length: 440

Fln nts: GAACAGATTAGGATTTAGCGCTACAATCCTGGAAAATaTGCAAtgAttGGCaTgcAAgTTCAGACTGTGTGGAATACTCCTGCCCGTTTATTGAGCTTCACACAGTGGCTTAGCAAGGGATTTCACCTGCCATACAAAAGGCTTGCATTTGGTATGGAGTTACTGCGAATGAATGAAACCATAGAGAGGCATTGGTTCTGAGTACTGCCAATAGTATTCATCAAAAACCTCAGGAGAAAGAACGAAGAACTTAGAAAACAGT_-_ATGGCATTCTGGGACCTTCTAACTGTGGCATCCATGCCAGTTGTGAAGATTCTTCTGATAAGTGGTCTTGGAGCCGTTCTGTCAACTCAGTATGTTGGCGTGCTTACTGAAGCTTGTCTAAAACATATGAATAAGGTCATTTTTGTTGTATTTACACCAGCACTTATGTTCGCAAGCCTGGCACAATCAGTGACATTCGAAGATCTCATTTCCTGGTGGTCCATGCCAGTCAATGTTTTTCTTACATATCTCTTCGGGGCTATCCTTGGATGGACAGTTGTGAAAATAACCAAGCCTCCAGAATATTTGAAGGGCATAGTTGTTGCAAACTGTTGTGCTGGAAACATGGGAAATCTTCTCGTCATTGTTGTCCCTGCGTTGTGTCAAGAACGGGGAAGTCCCTTTGGAGAACCCAGTGCTTGCCAAGTAACTGGGACAGCATATGCTTCATTTTCTCTGGCACTTGGCAGTGTCTTCGTATGGATTTATGCCTACAGTCTTATACGATCATCAAGTCAAATTCACGAAGAAAGGGAAATAGAAAATGGGCTTGATGAGACGGTCGCAAATATTGATTACTTAGATGACGAGAAAATCCCAAATGTTGATTACTTAAATGCTGGAGAAACGTCTAAACTTTTGTACACAGTCCAAATAATTCCGCAAGTGCCCTGTTCTGGACGAGATAATCCTTCTGATAAGCAGAATGCAAGCAGCATGGTGGCAGGCAATTCCTCTAGTGAAAAGCAAAGCTGTTTCCTAGCCTGGTTCAGAAAAGTTAAACAATATATGGATGAAACTGGACACCTAATTCTTGAGGTGTTAATAGCGCCTCCTACTGTTGGAGTGATTGCTGGATTTATTGTTGGAGCAATCTCACCAGCAAAGGCTTTAATTGTTGGTGCATCTGCTCCTCTTCGAGTGCTCCAAGATTCCATTTCATTACTGGGAGATGGAGCCATTCCAGGCATCATCCTATTAATGGGAGGACATCTAATCAAAGGTTTGAGCTCTTCAAAGCTAAGACCTGTGACTATTGTATTAATTATCTGTGTGAAGTTCGCATTACTTCCAGTGATTGGAATATTTGTAGTTAAAGGGGCATCCCATCTTGGGTTATTGCCAGCAGATCCATTGTATCACTATGTACTGATGGTCCAGTACACAGTCCCACCTGCTATGAGTATTGGGACAATGGCACAATTATTCAACGTGGGGGAACAAGACTGCTCTGTGCTTTTCTTATGGACTTATCTCTGGGCAGCCTTTGCTGTGACCTTTTGGTCAACAGTCTACATGTGGATTTTGTTGTCATAA___TTTTTTATCACTTTCTTCTAGTTCGAGTCCATTGGTTGGACCTTTACTTTTCAACCCAAGTTGAAAACTGATCAATCTTCATTCGTTTCATTCATTATTTCAATCGGCACAATATATTATTGTATTACATATCTTCGATGTAAAATATAGGAGTCATTTACTTTCAACATAGGATGCATCCATATATCTCTGCAAATGAATATAATTTCTACATT

Fln Alignment:

AllPineV4_c10509___MAFWDLLTVASMPVVKILLISGLGAVLSTQYVGVLTEACLKHMNKVIFVVFTPALMFASLAQSVTFEDLISWWSMPVNVFLTYLFGAILGWTVVKITKPPEYLKGIVVANCCAGNMGNLLVIVVPALCQERGSPFGEPSACQVTGTAYASFSLALGSVFVWIYAYSLIRSSSQIHEEREIENGLDETVANIDYLDDEKIPNVDYLNAGETSKLLYTVQIIPQVPCSGRDNPSDKQNASSMVAGNSSSEKQ-SCFLAWFRKVKQYMDETGHLILEVLIAPPTVGVIAGFIVGAISPAKALIVGASAPLRVLQDSISLLGDGAIPGIILLMGGHLIKGLSSSKLRPVTIVLIICVKFALLPVIGIFVVKGASHLGLLPADPLYHYVLMVQYTVPPAMSIGTMAQLFNVGEQDCSVLFLWTYLWAAFAVTFWSTVYMWILLS
B8LL56_______________MAFWDLLIVASMPVVKILLISGLGAVLSTRYAGVLTEDSLKHVNKVIFVVFTPALMFASLAQSVTFEDLISWWSMPFNVFLTFLFGAILGWIIVKITKPPEYLNGIVVANCCAGNMGNLLLIVVPALCHEKGSPFGEPSVCKLNGIAYASFSMALGSVFIWTYAYSLIRSSSQIHEEKEFKNGL-----------EEKIPNIDY--AGETSKLLQTIQIIPEVPSSGGDYPSDKQSASGLVVVNSSSSKKPSCFQAWPRKVKQYMKKTADLLFEELKAPPTIGVIAGFMVGAIPPVNALIVGASAPLRVIQDSISLLGDGAIPGIILLMGGHLVKGLSSSKLRPMIIVLIICAKFVLLPVIGIFVVKGASNLGLLPADPLYHFVLMIQYTVPPAMNIGTMAQLFNVGEQECSVIFFWTYLLAAISLTFWSTVYMWILFS

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
981	25		75		0.996486
1085	14	85			0.993533
1086	14	85			0.993533
1089	85	14			0.993533
1090		14	85		0.993533
1093	85			14	0.993533
1094	85			14	0.993533
1096		14	85		0.993533
1103	85	14			0.993533
1104	14			85	0.993533
1107		16		83	0.994512
1126	16		83		0.994512
1127		83		16	0.994512
1200	22		77		0.999999
1269	20			80	0.999999
1279	90	10			0.90298
1281			90	10	0.90298
1290		90	10		0.90298
1442	90		10		0.90298
1457		20		80	0.999999
1458		20	80		0.999999
1741		75	25		0.996473
1752	33			66	0.997452
1753			33	66	0.997452
1759	33	66			0.997452
1769		33	66		0.997452
1777		33		66	0.997452
1783		33	66		0.997452
1784		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain