SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29763

Length: 1111 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene29763 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SHL9_ARATH	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	retrotransposon unclassified	-	-	60%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	GHMP kinase N-terminal domain	IPR006204	-	-
Sma3	Mevalonate/galactokinase	IPR006206	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3		IPR010256	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	GHMP kinase, C-terminal domain	IPR013750	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: STOP codon was not found. Distance to subject end: 48 aas, your sequence is shorter than subject: 370 - 407

Fln protein: RRDLGCHSCLLKKNGVAGLPTIPRKHKQCDACILGKHSKQSFHDSHSRAHRKLELIHSDLCGPMPVPSANGNKYIMTFIDDYTRMCWVYLLKNKSDAFQTFKNFHKWIENDAQSHIGSIRTDNGKEYTSNEFENYLRQHGIKHQTTVPYNPQQNGVAERMNRTILNMVRSMLFFKNVKTMFWADVVLCAAYIKNRCPSSAIRNKTPYELWYGHVPSVKHLRIFGSTCYALIPKVHRNKLGARSRKCIFLGYSNTSKAYRLYDEVNKKFVLSRDVIFLESSKSDSVVERQLDRLDRFTKPKSFQEFDNQIPHLEGGIPILDQHVESSTEEQPPLHETPTPDDPLSDVIDRIGRLNLDSVPTPSTEQPGPSQ

Protein Length: 371

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGCTTATTGAAGAAAAATGGTGTTGCTGGTTTGCCTACAATTCCTAGAAAACATAAGCAATGTGATGCTTGCATTCTAGGAAAGCATAGCAAACAGTCTTTTCATGATTCACATTCAAGAGCACATAGGAAGCTTGAACTCATTCATTCAGATTTATGTGGTCCAATGCCTGTTCCTTCTGCAAATGGAAATAAATATATCATGACATTTATTGATGATTACACCAGAATGTGTTGGGTTTATTTATTGAAGAACAAATCTGATGCTTTTCAAACATTCAAGAATTTTCATAAATGGATTGAAAATGATGCACAATCTCATATTGGGTCTATTCGCACTGATAATGGAAAAGAATATACATCAAATGAATTTGAAAACTATCTTCGCCAACATGGGATCAAACATCAAACAACTGTGCCTTATAATCCCCAACAGAATGGTGTAGCTGAAAGAATGAATAGAACAATTTTGAATATGGTACGATCCATGCTTTTCTTCAAAAATGTAAAGACAATGTTTTGGGCTGATGTTGTTCTATGTGCTGCATATATAAAGAATAGATGTCCATCTAGTGCTATAAGAAACAAGACTCCTTATGAATTGTGGTATGGACATGTTCCTTCGGTAAAACATCTCAGGATCTTTGGTTCCACCTGTTATGCTTTAATACCAAAGGTACATAGAAACAAACTTGGTGCTAGAAGTCGTAAGTGTATCTTCCTGGGGTATTCAAACACATCTAAAGCATACCGCCTCTATGATGAAGTAAATAAAAAGTTTGTTTTATCTAGAGATGTCATCTTTCTTGAATCATCCAAATCTGACAGTGTTGTTGAGCGGCAACTTGATCGCCTGGATAGATTCACAAAACCAAAATCATTTCAAGAGTTTGATAATCAGATTCCACATCTTGAAGGGGGGATTCCTATACTAGATCAACATGTGGAATCCTCTACTGAAGAACAACCTCCCTTGCATGAAACTCCAACACCGGATGATCCTTTAAGTGATGTAATTGATAGAATTGGGAGACTCAATCTTGATTCAGTCCCAACTCCATCAACAGAGCAGCCTGGACCATCTCAGA

Fln Alignment:

AllPineV4_c10386___VAGLPTIPRKHKQCDACILGKHSKQSFHDSHS-RAHRKLELIHSDLCGPMPVPSANGNKYIMTFIDDYTRMCWVYLLKNKSDAFQTFKNFHKWIENDAQSHIGSIRTDNGKEYTSNEFENYLRQHGIKHQTTVPYNPQQNGVAERMNRTILNMVRSMLFFKNVKTMFWADVVLCAAYIKNRCPSSAIRNKTPYELWYGHVPSVKHLRIFGSTCYALIPKVHRNKLGARSRKCIFLGYSNTSKAYRLYDEVNKKFVLSRDVIF----LESSKSDSV
B8LKX7_______________VYGLPKISQSQGVCEGCMSGKQHMEKFIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIFDERCIPSTKSSSL

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
824	33		66		0.998869
831		33	66		0.997452
867	33		66		0.997452
873	80		20		0.999996
877		10		90	0.90298
891		20	80		0.999996
898			10	90	0.90298
899		10		90	0.90298
900	90	10			0.90298
901		10		80	0.959698
902	10			90	0.90298
917	11		88		0.923564
922			66	33	1.0
923	11		88		0.923564
926	11	11	11	66	0.944822
933	11	88			0.923564
934	88		11		0.923564
936	88	11			0.923564
937	11			88	0.923564
939	88		11		0.923564
940	77		22		0.999999
943	11			88	0.923564
944		11	88		0.923564
945	88		11		0.923564
947		11		88	0.923564
952	28		71		1.0
963	16			83	0.994512
997		40	60		1.0
999		80		20	0.995493
1006		80		20	0.995493
1008	80		20		0.995493
1083	33	66			0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain