SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29754

Length: 482 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene29754
CGTCGTGACCTTGGCTGTCACTCAATATGTCCATCCACTGGACTCCCTTTTTCTAACGCAATCCCACATATGAAAAAGGAAAGGGACGATTCCACTGAAAGAAGCAGATTCACAACATAAGAAAAGTGGAATGTAGTGTAGTTATACAGAGAGGAGAGTACCAGGTTGTTGGTGATCTTTCTATTTTTCTTCTGATATTGGTATTGGCAGAGTGAGTGAACGAATGGCTAATCTAAAGGCTCTAAAGAATAACGCAGCAGCTGCAATTTCTGCAAAGAAGCCAATGTGGCTGTATCCCAAGATACTTGCAGGTTTCAATCCTTCTGAGAGATGGGGTCACTCCACTTGTTACTCAGATGGCCATCTCTATGTCTTCGGGGGTTGCTGTGGAGGATTGCATTTCAGTGACGTTCTGACACTTGATTTGAGAACGATGGTGTGGAGCGCACTTGCAACAACTGGGCATCAGCCAGGTACGAGAG

Ace file of the UniGene sp_v2.0_unigene29754 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kelch repeat-containing protein [Danio rerio] gb\|AAW34264.1\| kelch repeat-containing protein [Danio rerio]	-	-	4.0e-05	39%
FL-Next	tr=Putative uncharacterized protein; Zea mays (Maize).	-	-	0.0	75%
Blast2go	kelch motif family protein	-	-	8.88068e-29	82%

Source	InterPros	Term	Type	Identity
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: C4IZJ4

Fln msg: Distance to subject end: 553 aas, your sequence is shorter than subject: 86 - 625

Fln protein: MANLKALKNNAAAAISAKKPMWLYPKILAGFNPSERWGHSTCYSDGHLYVFGGCCGGLHFSDVLTLDLRTMVWSALATTGHQPGTR

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATGTCCATCCACTGGACTCCCTTTTTCTAACGCAATCCCACATATGAAAAAGGAAAGGGACGATTCCACTGAAAGAAGCAGATTCACAACATAAGAAAAGTGGAATGTAGTGTAGTTATACAGAGAGGAGAGTACCAGGTTGTTGGTGATCTTTCTATTTTTCTTCTGATATTGGTATTGGCAGAGTGAGTGAACGA_-_ATGGCTAATCTAAAGGCTCTAAAGAATAACGCAGCAGCTGCAATTTCTGCAAAGAAGCCAATGTGGCTGTATCCCAAGATACTTGCAGGTTTCAATCCTTCTGAGAGATGGGGTCACTCCACTTGTTACTCAGATGGCCATCTCTATGTCTTCGGGGGTTGCTGTGGAGGATTGCATTTCAGTGACGTTCTGACACTTGATTTGAGAACGATGGTGTGGAGCGCACTTGCAACAACTGGGCATCAGCCAGGTACGAGAG

Fln Alignment:

AllPineV4_c10354___MWLYPKILAGFNPSERWGHSTCYSDGHLYVFGGCCGGLHFSDVLTLDLRTMVWSALATTGHQPGTR
C4IZJ4_______________MWLYPKVV-GFNPPERWGHSACFFEGVVYVFGGCCGGLHFSDVVTLDVETMAWSALATTGQRPGTR

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
80		25	75		0.996473
82	75			25	0.996473
83	75	25			0.996473
85			75	25	0.996473
89	25			75	0.996473
90	25	75			0.996473
93	25	75			0.996473
94		75		25	0.996473
95	75		25		0.996473
98	25		75		0.996473
99	33	66			0.997452
104		75	25		0.996477
272	83	16			0.994512
275		16		83	0.994512
276	16	83			0.994512
325	33		66		0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain