SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29734

Length: 560 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene29734
CGTCGTGACCTTGGCTGTCACTCAAATTAGTTGGCATCGTAGGACACAGTAATGGCACCGGGGATCAGAGGCGTGCAGCTGGCAAGCATTTCAGGTCATAAAGGCAGTGGATTGAGTGCGGAAGATGAGTTCAGGGACCTGGAAGTAGCTCCCCTGTTGGGATCTCCTTCCGATGGGGAAGGGGATGGAAGTTCGGAGAATAAGAAGGCCTTGGAGAAATTGGAGGTTAAGGTTATCGGCATGACGTGTGCAGCCTGTTCCAATTCTGTCGAGAAAGCTCTGCGGAATTTGTCTGGGGTTTCCAGTGCTTCTGTAGCACTTCTTCAGAACATGGCCAATGTCACTTATGATCCCTCCAAAGTCAAGGAGGAAGACATTAAAGAGGCCATTGAGGATGCAGGTTTTGATGCTGAGGTTTTACCAAAGATTTCTTTCAAGTCTAAAGATCAGGGAACTGTGACAGGGAAGTTCAGGATCGGTGGAATGACATGTGCAGCCTGTGTGAACTCCGTTGAAGGAATACTGAGAAATCTACCTGGTGTGACAGAGCAGTCGTGGCA

Ace file of the UniGene sp_v2.0_unigene29734

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heavy metal ATPase n=1 Tax=Cucumis melo subsp. melo RepID=E5GCL7_CUCME	-	-	7.0e-33	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	heavy metal atpase	-	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	regulation of stomatal movement	GO:0010119	Biological Process	73%
Blast2go	ethylene mediated signaling pathway	GO:0009873	Biological Process	73%
Blast2go	response to salt stress	GO:0009651	Biological Process	73%
Blast2go	copper ion transmembrane transport	GO:0035434	Biological Process	73%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%
Blast2go	copper ion transmembrane transporter activity	GO:0005375	Molecular Function	73%
Blast2go	catalytic activity	GO:0003824	Molecular Function	73%
Blast2go	apoplast	GO:0048046	Cellular Component	73%
Blast2go	cell wall	GO:0005618	Cellular Component	73%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Flagellar motor protein MotA, conserved site	IPR000540	-	-
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3		IPR001756	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3		IPR001877	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	-
Sma3	Heavy metal-associated domain, copper ion-binding	IPR006122	-	-
Sma3	ATPase, P type, cation/copper-transporter	IPR006403	-	-
Sma3	ATPase, P-type, heavy metal translocating	IPR006416	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Tachykinin/Neurokinin-like, conserved site	IPR013055	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ20

Fln msg: Distance to subject end: 834 aas, your sequence is shorter than subject: 169 - 998

Fln protein: MAPGIRGVQLASISGHKGSGLSAEDEFRDLEVAPLLGSPSDGEGDGSSENKKALEKLEVKVIGMTCAACSNSVEKALRNLSGVSSASVALLQNMANVTYDPSKVKEEDIKEAIEDAGFDAEVLPKISFKSKDQGTVTGKFRIGGMTCAACVNSVEGILRNLPGVTEQSW

Protein Length: 170

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTAGTTGGCATCGTAGGACACAGTA_-_ATGGCACCGGGGATCAGAGGCGTGCAGCTGGCAAGCATTTCAGGTCATAAAGGCAGTGGATTGAGTGCGGAAGATGAGTTCAGGGACCTGGAAGTAGCTCCCCTGTTGGGATCTCCTTCCGATGGGGAAGGGGATGGAAGTTCGGAGAATAAGAAGGCCTTGGAGAAATTGGAGGTTAAGGTTATCGGCATGACGTGTGCAGCCTGTTCCAATTCTGTCGAGAAAGCTCTGCGGAATTTGTCTGGGGTTTCCAGTGCTTCTGTAGCACTTCTTCAGAACATGGCCAATGTCACTTATGATCCCTCCAAAGTCAAGGAGGAAGACATTAAAGAGGCCATTGAGGATGCAGGTTTTGATGCTGAGGTTTTACCAAAGATTTCTTTCAAGTCTAAAGATCAGGGAACTGTGACAGGGAAGTTCAGGATCGGTGGAATGACATGTGCAGCCTGTGTGAACTCCGTTGAAGGAATACTGAGAAATCTACCTGGTGTGACAGAGCAGTCGTGGCA

Fln Alignment:

AllPineV4_c10304___MAPGIRGVQLASISGHKGSGLSAEDEFRDLEVAPLLXXXXXXXXXXXXXNKKALEKLEVKVIGMTCAACSNSVEKALRNXXXXXXXXXXXXQNMANVTYDPSKVKEEDIKEAIEDAGFDAEVLPKISFKSKDQGTVTGKFRIGGMTCAACVNSVEGILRNLPGVT
B8LQ20_______________MAPGI-SLQLASISGQKGSGLSAEDESRDLEEAPLLGERDERLE-----NRKGLEKLEVKVIGMTCAACSNSVEKALLNLAGVCTASVALLQNKADVTYDPSKVKEEDIKEAIEDAGFDAEVLPKISSRSKDQGTVTGKFRIGGMTCAACVNSVEGILRNLPGVT

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
147	33			66	1.0
168		33		66	1.0
373		40	60		1.0
377	50			33	1.0
378		66	33		1.0
379	66	33			1.0
382	66		33		1.0
383	80			20	0.995494
384	80			20	0.995495

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain