SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29708

Length: 2310 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene29708
ATGGGGACTTTCCCTGGCCTGTGACAGTTGGAATCAGTTCCACTCCCACTCCCACTGACTCCTTCCATGCTTTCACCCGACATACAGTAGAAGTCAGAGGGAGAAAAACACAGCCCAGCTAGTCCAGCCCATCGTGTTTATAATATCATTATCGTGTTTAGCATATCATTATTACTATGATTAGACACTCTTATCCATCCACCCCACACCTGTTCCAATGCTCTCCTCCACAATTCCCCTTTATATTCTTCACACACAATTTTCCTCAACAGTTCCCCTCTATATTCTTCACACGCAACCTTCTCTTTGTATTCTTGTCAGGCATTCAATCTTTTGTATCGCAGCATCAGGACCCCCGCATTCAATCCCAAACAGTTGAGTCGATGGAAGATTTGGGGTATCCTGCCCGACTATGGATTTGGGCAGTGGCTTACTTGGTGGTCATGTTGTGGAACCACCGTAATGGCATAGGCGTAGCACTATGTGAAGTAAAACGTGGTTTCAACAAGACTGTGATCGCCAAAGTTTGGGTGGACAGAGAGATTGGTATTGGAGAGACGGATGAGGACTTCATCTGTACAACTCTGGACTGGTGGCCACCCAACAAATGCGATTACGGGACATGCAGCTGGGGGAACGCCTCCTTACTCAACTTAGATCTTGAAAACCCACTGCTGGCAAATGCTGTAAAAGCTTTCAATCCATTGAAGATAAGATTGGGTGGAACATTGCAAGACAAAGTCATATATGATGTTGGGCATTTGAAGCAACCTTGCCATCCTTTTGTTAAGAATGAATCACTGATGTTTGGATTCACAGATGGATGTCTCCCCATGTCTAGATGGGATGCCCTCAATCACTTTTTCAATAAAACAGGGGCTGTGGTGGCTTTTGGATTGAATGCACTGAATGGAAGGAAAATGATGTCAAATAGAGTTATGGAAGGGCCTTGGGATTCAAGTAATGCTCGTGATTTTATTCAGTATACAGTTGATCATGGTTACAAGATAAATGCATGGGAGTTAGGAAATGAGTTGAGTGGAAGTGGTGTTGGAACAAGCATCAGTTGCAAGCAGTATGCAGCTGATGTAATTCAGCTTGATAAGATTCTGAAACAGATTTACAAGGATTTTCAAAAGAAACCACTCCTTATAGCACCTGATGGATTTTTTGAAGCCAACTGGTTTAAGGAGATTATTCGGCAAACAGGACCAAACATTTTGGATGTTGTTACACATCATATCTACAACCTTGGGGCAGGTGTGGATGAGCACCTTGTGGAAAAGATACTGGATCCATCTTATCTGAGTCGAGAAGCATCCACATTCAAGAGTCTGAAAGCCATTTTGCAGGAATATGGGCCTTGGTCAAGTGCATGGGTGGGTGAAGCTGGTGGAGCTTATAACAGTGGGCACGATCTCGTCACGAATGCTTTTATATTTAGTTTTTGACAAAGCTTGATTGGTGGTAACTATGGCCTTTTAAACACTACGACTTATGTGCCAAATCCTGATTATTACAGTGCACTTCTCTGGCATCGACTAATGGGAAAACGTGTTCTTTCAACAATTTCTAAAGGAACAGAATATTTGCATGCTTATGCACATTGTACTAAGAATGCGAGAGGAATCACTTTACTGTTGATAAACTTTAGTAGGGACACTCGTATCTCTGTGCAGCTCTCTACCATTTCAGGAATTTTCACAGAAGAAATGGATACAGTCTTGAAGTTTTCAAATGCAAAGGAGCTGAAATCTTTGATTGCAAACAGAAGGAAGAAAAGATTGAGACTGGAGTATCATTTGACGGCTAAAGATGGTAATTTCCACAGCCAAACTATGCTTCTCAATGGGAAAGTTCTTGATGTGACTCCTGAGGGTGAGATACCTTCTTTAGAGCCGGTGACTGTTGATGCCGACAAACGTATTTCTGTAGCACCTCTCTCTATTGCATTTGTGTCTCTTCCAGATGTTCAATTGCCAGCATGCAGCAGTTAGGGGTTGATTATCAAAAACAAAATATCATTCTTTAAGTTGGTTTATGTAAAAAAGATTTAACAACAGCCGAGTTGAATTACCTACTACGGCTGACACACAGTTTTAATAAATCATTTTCAATGCTCAACGAGTAAATTTGTGCTACGGTGTTGAGATGATGGATTGTTTTATCATCTTTTTCCTGCCCTATGTTTTGGGAAATGCTCTGCAAGGAAAGGCTCTGAAATTAAGATGATCATTTCTTCAGTTAAAATATTATGTTTTTGAGAATAAAAGCCTGTTACTATACTCTGTTAGTAGAACTAATGACATT

Ace file of the UniGene sp_v2.0_unigene29708

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heparanase, putative n=1 Tax=Ricinus communis RepID=B9T602_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	heparanase-like protein 3-like	-	-	68%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 79	IPR005199	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Calmodulin-binding domain, plant	IPR012417	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM26

Fln msg: your sequence is longer than subject: 607 - 381

Fln protein: MIRHSYPSTPHLFQCSPPQFPFIFFTHNFPQQFPSIFFTRNLLFVFLSGIQSFVSQHQDPRIQSQTVESMEDLGYPARLWIWAVAYLVVMLWNHRNGIGVALCEVKRGFNKTVIAKVWVDREIGIGETDEDFICTTLDWWPPNKCDYGTCSWGNASLLNLDLENPLLANAVKAFNPLKIRLGGTLQDKVIYDVGHLKQPCHPFVKNESLMFGFTDGCLPMSRWDALNHFFNKTGAVVAFGLNALNGRKMMSNRVMEGPWDSSNARDFIQYTVDHGYKINAWELGNELSGSGVGTSISCKQYAADVIQLDKILKQIYKDFQKKPLLIAPDGFFEANWFKEIIRQTGPNILDVVTHHIYNLGAGVDEHLVEKILDPSYLSREASTFKSLKAILQEYGPWSSAWVGEAGGAYNSGHDLVTNAFIFSF*QSLIGGNYGLLNTTTYVPNPDYYSALLWHRLMGKRVLSTISKGTEYLHAYAHCTKNARGITLLLINFSRDTRISVQLSTISGIFTEEMDTVLKFSNAKELKSLIANRRKKRLRLEYHLTAKDGNFHSQTMLLNGKVLDVTPEGEIPSLEPVTVDADKRISVAPLSIAFVSLPDVQLPACSS*

Protein Length: 608

Fln nts: ATGGGGACTTTCCCTGGCCTGTGACAGTTGGAATCAGTTCCACTCCCACTCCCACTGACTCCTTCCATGCTTTCACCCGACATACAGTAGAAGTCAGAGGGAGAAAAACACAGCCCAGCTAGTCCAGCCCATCGTGTTTATAATATCATTATCGTGTTTAGCATATCATTATTACT_-_ATGATTAGACACTCTTATCCATCCACCCCACACCTGTTCCAATGCTCTCCTCCACAATTCCCCTTTATATTCTTCACACACAATTTTCCTCAACAGTTCCCCTCTATATTCTTCACACGCAACCTTCTCTTTGTATTCTTGTCAGGCATTCAATCTTTTGTATCGCAGCATCAGGACCCCCGCATTCAATCCCAAACAGTTGAGTCGATGGAAGATTTGGGGTATCCTGCCCGACTATGGATTTGGGCAGTGGCTTACTTGGTGGTCATGTTGTGGAACCACCGTAATGGCATAGGCGTAGCACTATGTGAAGTAAAACGTGGTTTCAACAAGACTGTGATCGCCAAAGTTTGGGTGGACAGAGAGATTGGTATTGGAGAGACGGATGAGGACTTCATCTGTACAACTCTGGACTGGTGGCCACCCAACAAATGCGATTACGGGACATGCAGCTGGGGGAACGCCTCCTTACTCAACTTAGATCTTGAAAACCCACTGCTGGCAAATGCTGTAAAAGCTTTCAATCCATTGAAGATAAGATTGGGTGGAACATTGCAAGACAAAGTCATATATGATGTTGGGCATTTGAAGCAACCTTGCCATCCTTTTGTTAAGAATGAATCACTGATGTTTGGATTCACAGATGGATGTCTCCCCATGTCTAGATGGGATGCCCTCAATCACTTTTTCAATAAAACAGGGGCTGTGGTGGCTTTTGGATTGAATGCACTGAATGGAAGGAAAATGATGTCAAATAGAGTTATGGAAGGGCCTTGGGATTCAAGTAATGCTCGTGATTTTATTCAGTATACAGTTGATCATGGTTACAAGATAAATGCATGGGAGTTAGGAAATGAGTTGAGTGGAAGTGGTGTTGGAACAAGCATCAGTTGCAAGCAGTATGCAGCTGATGTAATTCAGCTTGATAAGATTCTGAAACAGATTTACAAGGATTTTCAAAAGAAACCACTCCTTATAGCACCTGATGGATTTTTTGAAGCCAACTGGTTTAAGGAGATTATTCGGCAAACAGGACCAAACATTTTGGATGTTGTTACACATCATATCTACAACCTTGGGGCAGGTGTGGATGAGCACCTTGTGGAAAAGATACTGGATCCATCTTATCTGAGTCGAGAAGCATCCACATTCAAGAGTCTGAAAGCCATTTTGCAGGAATATGGGCCTTGGTCAAGTGCATGGGTGGGTGAAGCTGGTGGAGCTTATAACAGTGGGCACGATCTCGTCACGAATGCTTTTATATTTAGTTTTTGACAAAGCTTGATTGGTGGTAACTATGGCCTTTTAAACACTACGACTTATGTGCCAAATCCTGATTATTACAGTGCACTTCTCTGGCATCGACTAATGGGAAAACGTGTTCTTTCAACAATTTCTAAAGGAACAGAATATTTGCATGCTTATGCACATTGTACTAAGAATGCGAGAGGAATCACTTTACTGTTGATAAACTTTAGTAGGGACACTCGTATCTCTGTGCAGCTCTCTACCATTTCAGGAATTTTCACAGAAGAAATGGATACAGTCTTGAAGTTTTCAAATGCAAAGGAGCTGAAATCTTTGATTGCAAACAGAAGGAAGAAAAGATTGAGACTGGAGTATCATTTGACGGCTAAAGATGGTAATTTCCACAGCCAAACTATGCTTCTCAATGGGAAAGTTCTTGATGTGACTCCTGAGGGTGAGATACCTTCTTTAGAGCCGGTGACTGTTGATGCCGACAAACGTATTTCTGTAGCACCTCTCTCTATTGCATTTGTGTCTCTTCCAGATGTTCAATTGCCAGCATGCAGCAGTTAG___GGGTTGATTATCAAAAACAAAATATCATTCTTTAAGTTGGTTTATGTAAAAAAGATTTAACAACAGCCGAGTTGAATTACCTACTACGGCTGACACACAGTTTTAATAAATCATTTTCAATGCTCAACGAGTAAATTTGTGCTACGGTGTTGAGATGATGGATTGTTTTATCATCTTTTTCCTGCCCTATGTTTTGGGAAATGCTCTGCAAGGAAAGGCTCTGAAATTAAGATGATCATTTCTTCAGTTAAAATATTATGTTTTTGAGAATAAAAGCCTGTTACTATACTCTGTTAGTAGAACTAATGACATT

Fln Alignment:

AllPineV4_c10214___MSRWDALNHFFNKTGAVVAFGLNALNGRKMMSNRVMEGPWDSSNARDFIQYTVDHGYKINAWELGNELSGSGVGTSISCKQYAADVIQLDKILKQIYKDFQKKPLLIAPDGFFEANWFKEIIRQTGPNILDVVTHHIYNLGAGVDEHLVEKILDPSYLSREASTFKSLKAILQEYGPWSSAWVGEAGGAYNSGHDLVTNAFIFSF------------------*QSLIGGNYGLLNTTTYVPNPDYYSALLWHRLMGKRVLSTISKGTEYLHAYAHCTKNARGITLLLINFSRDTRISVQLSTISGIFTEEMDTVLKFSNAKELKSLIANRRKKRLRLEYHLTAKDGNFHSQTMLLNGKVLDVTPEGEIPSLEPVTVDADKRISVAPLSIAFVSLPDVQLPACS
B8LM26_______________MSRWDALNAFFNKTGAVVAFGLNALNGKRWKSDGATDGPWDSSNARDFIQYTVDHGHKIKAWELGNELSGSGVGTSISVEQYAADVIELHGILDGIYKDYEEKPLLIAPDGFFVADWFKEFLNLTGPNIMNVVTHHFYNLGAGVDNDLVEKILNPSYLSQEASTFKGLQAVLQNYGPWSKAWVGETGGAYNSGHNLITNAFVMSFWYLDQLGMASAFSTKSFCRQSLIGGNYGLLNTTTFLPNPDYYSALLWHRLMGTRVLATNSTGTEYLRAYAHCTKSSRGVTLLLINLSRDTGISVQVSTGSGTSTD-----------------------RNSRLEYHLTAKDGDLHSQTVLLNGNILNITPDGEIPSLSAVTVPANRPILVAPLSIAFVNLPYVQFPACS

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
415	80		20		0.995499
447		25		75	0.996473
465	40		60		1.0
486			40	60	1.0
550		20		80	0.995505
552		40	60		1.0
562	40		60		1.0
565	40		60		1.0
584	60		40		1.0
726	11		88		0.991528
837		71		28	1.0
858		71		28	1.0
864		42		57	1.0
918			42	42	1.0
937	83	16			0.994515
940	40		40	20	1.0
967	80		20		0.995494
1093	85		14		0.993533
1146	60		40		1.0
1150			60	40	1.0
1286	33	66			0.997452
1501			33	66	1.0
1551	50		50		1.0
1564	50		50		1.0
1594	66		33		1.0
1691	85			14	0.993533
1698	14			85	0.993533
1701	85	14			0.993533
1702	14	85			0.993533
1735	11	88			0.991528
1736	88			11	0.991528
1769			77	22	0.999999
1775		14		85	0.993533
1969		88		11	0.991528

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain