SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29705

Length: 570 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene29705
TCTCATGGGGCTCGGCTGGCCGAATTTCAACAGCACCGGGATCAACCGATGGGAAAGGTGAAGCTTATGTGCAGCTTTGGAGGTAAAATTCTTCCCAGGCCTAGTGATGGGAGGCTTAGATATGTGGGTGGAGAGACGCGGATCATTACAGTGAATAAAGGTATTACTTATGCGGAGCTTGTGCAGAAGCTGACAGATGCTTACGGCCAAGCTCTGATTCTCAAGTATCAATTACCGGACGAGGATCTTGATGCCCTAGTTTCTGTGTCTTGTGACGAGGACCTTGAGAATATGATGGAAGAGTATGCCAGGCTTGAGGGCGGCGAAGGTTCTTCAAGGCTCCGCGTCTTTCTATTTTCCACAGCTGATTATGATCTCAGCCATTTTGATGCAATGAATGATAAGTGGAACGCCAAGCAACGATATGTTGATGCCGTCAATGGCATCTCTGGCATCCCAGAGACAGGATTCGGAAAGCACGCTGACAGTATAAAATCTACATCTATGCTACAAGCGGAGAAGATGAATGCGCACGAGGCTTCAGAGAAGTGGTGTGGGAGTCCAAGAGCT

Ace file of the UniGene sp_v2.0_unigene29705 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	octicosapeptide/Phox/Bem1p domain-containing protein kinase [Arabidopsis thaliana] dbj\|BAB08796.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED96925.1\| octicosapeptide/Phox/Bem1p domain-containing protein kinase [Arabidopsis thaliana]	-	-	7.0e-37	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	serine threonine protein	-	-	0.0	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Vacuolar protein sorting-associated protein	IPR009543	-	-
Sma3		IPR015706	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWM9

Fln msg: Distance to subject end: 127 aas, atg_distance in limit (1-15): atg_distance = 2, your sequence is shorter than subject: 174 - 318

Fln protein: MGKVKLMCSFGGKILPRPSDGRLRYVGGETRIITVNKGITYAELVQKLTDAYGQALILKYQLPDEDLDALVSVSCDEDLENMMEEYARLEGGEGSSRLRVFLFSTADYDLSHFDAMNDKWNAKQRYVDAVNGISGIPETGFGKHADSIKSTSMLQAEKMNAHEASEKWCGSPRA

Protein Length: 175

Fln nts: TCTCATGGGGCTCGGCTGGCCGAATTTCAACAGCACCGGGATCAACCG_-_ATGGGAAAGGTGAAGCTTATGTGCAGCTTTGGAGGTAAAATTCTTCCCAGGCCTAGTGATGGGAGGCTTAGATATGTGGGTGGAGAGACGCGGATCATTACAGTGAATAAAGGTATTACTTATGCGGAGCTTGTGCAGAAGCTGACAGATGCTTACGGCCAAGCTCTGATTCTCAAGTATCAATTACCGGACGAGGATCTTGATGCCCTAGTTTCTGTGTCTTGTGACGAGGACCTTGAGAATATGATGGAAGAGTATGCCAGGCTTGAGGGCGGCGAAGGTTCTTCAAGGCTCCGCGTCTTTCTATTTTCCACAGCTGATTATGATCTCAGCCATTTTGATGCAATGAATGATAAGTGGAACGCCAAGCAACGATATGTTGATGCCGTCAATGGCATCTCTGGCATCCCAGAGACAGGATTCGGAAAGCACGCTGACAGTATAAAATCTACATCTATGCTACAAGCGGAGAAGATGAATGCGCACGAGGCTTCAGAGAAGTGGTGTGGGAGTCCAAGAGCT

Fln Alignment:

AllPineV4_c10206___KVKLMCSFGGKILPRPSDGRLRYVGGETRIITVNKGITYAELVQKLTDAY-GQALILKYQLPDEDLDALVSVSCDEDLENMMEEYARLEGGEGSS---RLRVFLFSTADYDLSHFDAMNDKWNAKQRYVDAVNGIS
A9NWM9_______________KMKFLCSYGGKILPRPSDGQLRYVGGETRLVTVDRSITFRDFMKKLEDIFETMNVIIKYQLPTLDLDILISVICDEDLQNMMEEYDRYDSHKESGPCPRVKAFLFP----QKPAVPSVENQASPKQRYVDAVNGLA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
383	80		20		0.995493
421		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain