SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29677

Length: 993 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene29677

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	N-acetyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SGZ0_RICCO	-	-	51%
FL-Next	tr=N-acetyltransferase, putative; Ricinus communis (Castor bean).	-	-	52%
Blast2go	probable n-acetyltransferase hookless 1	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	65%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	65%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	65%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	65%

Source	InterPros	Term	Type	Identity
Sma3	GNAT domain	IPR000182	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9SGZ0

Fln msg: your sequence is shorter than subject: 255 - 403

Fln protein: NEACIKLFVEKCGFTKFRTPAILVHPVHSHSKRISIRANILKLDVAEAESLYRECMGTAEFFPKDIDAVLGNRLSLGTWVAVPRAEQWQRPRRYGAGSGGSSSWAVISMWNTSEVFKMKVKGVRMVTRMYAATSRFLDRALPWLNIPSVPDVFRSFGVAFLYGVHAEGPRGGEMMNHLCRFAHNLARAKGCRLVATEVGGCDPLKHYIPHWNCFSCPEDLWCIKKLTPATEQEEEHDWSKSAAGVRLFVDPREF*

Protein Length: 256

Fln nts: ACAACGAAGCGTGCATCAAGCTTTTCGTTGAGAAATGCGGCTTCACCAAATTTAGAACCCCCGCCATCTTAGTCCACCCCGTCCATTCCCACTCCAAACGCATCTCCATTAGAGCAAACATACTCAAGCTTGACGTTGCAGAAGCGGAGAGTCTATATCGGGAATGTATGGGAACGGCGGAATTCTTCCCCAAAGACATAGACGCCGTGCTGGGTAATAGGCTGAGCCTGGGCACTTGGGTGGCCGTCCCAAGGGCGGAGCAATGGCAACGACCCCGTCGCTACGGTGCCGGTTCCGGTGGTTCTAGTTCTTGGGCGGTTATCAGCATGTGGAACACGTCGGAGGTGTTCAAGATGAAAGTAAAAGGGGTGCGCATGGTTACGCGTATGTATGCCGCCACGAGCCGGTTTTTGGACAGAGCATTGCCGTGGCTCAACATCCCGTCGGTGCCAGACGTGTTCCGTTCCTTCGGCGTGGCTTTTCTGTACGGGGTGCATGCAGAGGGACCGAGGGGCGGAGAGATGATGAACCATCTCTGCCGCTTTGCTCATAATTTAGCGAGGGCGAAAGGGTGCCGACTTGTGGCCACCGAAGTTGGGGGTTGTGACCCGTTGAAGCACTATATCCCCCACTGGAATTGTTTCTCTTGTCCAGAGGACCTGTGGTGCATCAAGAAGCTTACCCCTGCAACAGAGCAGGAGGAGGAGCACGACTGGAGCAAGTCAGCCGCCGGTGTCAGGCTTTTTGTTGATCCTCGAGAATTTTGA___CGAGGGTAATTCTAAGAGTTCCATGTGGTAAATGAGAAGGCCGTCTATCAACACGTGCCAACATACTTGAAATCAGCAACGAATATGTACCATGTTACAGGGCATTAATTCGCGGGACAGCATGGATACTGCCCCGCCCCTTAATGGCTCGATAACAGTGTATATATTGATTGCCCGTGAAATCTATACTTAATAAATGAAAATATATGCATTTTGGGTTGGATAC

Fln Alignment:

AllPineV4_c10131___NEACIKLFVEKCGFTKFRTPAILVHPVHSHSKRISIRANILKLDVAEAESLYRECMGTAEFFPKDIDAVLGNRLSLGTWVAVPRAEQWQR--PRRYXXXXXXXXXWAVISMWNTSEVFKMKVKGVRMVTRMYAATSRFLDRALPWLNIPSVPDVFRSFGVAFLYGVHAEGPRGGEMMNHLCRFAHNLARAKGCRLVATEVGGCDPLKHYIPHWNCFSCPEDLWCIKKLTPATEQEEEHDWSKSAAGVRLFVDPREF
B9SGZ0_______________NHASVKLFTDKCGYTKFRTPSILVNPVFAHRLAVSNRVTIFKLPPNDAELLYRRRFATTEFFPRDIDSVLNNKLSLGTFLAVPRGSYTHNSWPGFDKFLSDPPESWAVLSVWNCKDVFRLEVRGASRVKRTFAKTTRIVDKALPFLKLPSVPELFRPFGLHFLYGVGGEGPHAVKMVKALCAHAHNLAKERGCGVVATEVSSCEPLKLGIPYWKMLSCAEDLWCIKRLGEDYSDGSVGDWTKSPPGVSIFVDPREF

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
702		80	20		0.995493
716		80	20		0.995493
734	20	80			0.995493
748		16		83	0.994523
793		20		80	0.995493
816		20	80		0.995493
826	85		14		0.993533
866	16	83			0.994513
909		66	33		0.997476
916	33	66			0.997476
953			66	33	0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain