SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29663

Length: 1434 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene29663 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	lanatoside 15-O-acetylesterase [Digitalis grandiflora]	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	lanatoside 15-o-acetylesterase	-	-	64%

Source	InterPros	Term	Type	Identity
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMG5

Fln msg:

Fln protein: MGSCLLLQALVLTALLPVMAYGNCDFTAIFNFGDSNSDTGGWHFAFPYQMLPDNAPYGRTYFGKPSFRYSDGRLSVDFLAQALGLPFLSPYLQSVGSSFEHGANFAASGAAVRKTSTDFNAPISLTVQIDEFKIFKQLVLDPVSAKGSFTPLPSAQSFQTGIYTIEIGGNDFDYAYRKLNLSPAQVKQTVLPQVAQSVAAGVQELYNNGARTILVKNVGPQGCGPFWLTYFSHAANDFDQNGCSISYNDAVTFYNTQLREQLSTLRKQLPGADIVYVNQYDIVYDFFANPSNYGFKATTQACCGQGGKYSFTWGAQCGLTGTVDGRTVTVGSCSDPASYIIWDGIHLTDQANRLLTKQILTGKFFEPSTFSISNRCQIQPI*

Protein Length: 383

Fln nts: ATAAAGTAGCGTTCTTGAGGATCCATTGCTGGAGAGTCAGAGTTTTCACGTTCCGGTCTGTATCTATAGAGG_-_ATGGGTTCGTGTTTGCTTTTGCAGGCGCTCGTACTGACAGCCCTGCTGCCTGTCATGGCTTATGGCAACTGTGATTTCACTGCCATATTTAATTTTGGGGACTCCAACTCTGACACGGGTGGATGGCACTTTGCATTCCCATATCAAATGCTTCCGGATAATGCTCCTTATGGAAGAACATATTTTGGGAAGCCTTCGTTTCGTTACAGTGACGGAAGGCTTTCAGTTGATTTCTTGGCACAGGCGTTAGGATTGCCGTTTCTGAGTCCGTATTTGCAGTCAGTTGGGTCGAGTTTCGAACATGGAGCTAACTTTGCTGCTTCCGGTGCTGCTGTACGAAAGACTTCGACCGATTTTAATGCTCCCATATCTCTTACTGTTCAGATTGATGAGTTCAAGATCTTCAAGCAACTGGTTCTCGACCCGGTCAGCGCAAAGGGGTCTTTTACCCCGCTGCCAAGCGCACAATCCTTCCAAACGGGCATTTACACTATAGAGATCGGAGGCAACGACTTTGACTATGCATACAGGAAACTCAACCTCTCCCCCGCCCAGGTCAAGCAGACTGTTCTTCCCCAGGTTGCCCAGTCTGTTGCAGCGGGTGTGCAGGAGCTCTATAATAATGGGGCGAGGACGATTCTCGTGAAGAACGTTGGGCCTCAAGGCTGCGGACCATTCTGGCTCACTTACTTCAGTCACGCAGCCAACGATTTCGATCAAAATGGCTGCTCGATTTCATATAATGATGCAGTGACATTCTACAACACACAACTCCGAGAACAACTCTCTACTCTGCGCAAGCAGCTCCCGGGAGCCGACATTGTCTACGTCAATCAATACGACATAGTCTACGATTTCTTCGCCAACCCTTCTAACTATGGATTTAAGGCCACCACTCAAGCTTGCTGTGGACAAGGAGGAAAATACAGCTTCACCTGGGGAGCACAATGTGGACTCACGGGCACTGTTGATGGCAGGACTGTGACGGTAGGCTCCTGTTCAGATCCCGCCTCTTATATCATTTGGGATGGAATCCACCTAACAGACCAGGCCAACAGGCTTTTGACCAAACAAATTCTGACTGGCAAATTCTTCGAGCCATCTACATTCTCCATCAGCAACCGTTGCCAAATTCAACCCATTTGA___TCCCGTGTGGGGGCCCTGATTATTCACTGTTTTTGTGAAGCCAAAATAAACGTGGGGCAGACAGGGCTCCAGCTGTAGCATTACCTTGTACTACCGTTGTTATAATAATTAAGAAAAGGAAGAGCTAATCTCTGAAACGCCTGTCAAAATCTTATACAGCTTTTGAACTGGTGTGATGGATCAATATTGTCTAAGAAAATGTTAATAACATGAAAT

Fln Alignment:

AllPineV4_c10084___PVMAYGNCDFTAIFNFGDSNSDTGGWHFAFPYQMLPDNAPYGRTYFGKPSFRYSDGRLSVDFLAQALGLPFLSPYLQSVGSSFEHGANFAASGAAVRKTSTDFNAPISLTVQIDEFKIFKQLVLDPVSAKGSFTPLPSAQSFQTGIYTIEIGGNDFDYAYRKLNLSPAQVKQTVLPQVAQSVAAGVQELYNNGARTILVKNVGPQGCGPFWLTYFSHAANDFDQNGCSISYNDAVTFYNTQLREQLSTLRKQLPGADIVYVNQYDIVYDFFANPSNYGFKATTQACCGQGGKYSFTWGAQCXXXXXXXXXXXXXGSCSDPASYIIWDGIHLTDQANRLLTKQILTGKFFEPSTFSISNRCQIQPI
B8LMG5_______________PVIAYGKCDFPAIFNFGDSNSDTGGWHFAFPYQMLPDNAPYGRTFFGQPSYRYSDGRLSVDFLAQALGLPFISPFLQSVGSRFEQGANFAASGASVRPTSTDFNAPISLTVQLNQFKVFKQQVLDTISSHGSLNYLPSADSFKTGIYTIEIGGNDFDNAYRSLKLSPLQVKQTILPKLAKSVGGAVQELYNEGARTILVKDVGPQGCGPFWLTYFSHAPTDFDQHGCSISYNDAVQFYNTQLREQLSLVRKQLPGADIVYVSQYDIIYDFFANPSKYGFKATTQSCCGVGGKYNFTWAAQCGLTGPVNGKSVTVGSCSDPASYIIWDGIHLTDQANRVLTQQILGGKYFEPSTFSITSRCQIQPI

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
156	33	66			0.997452
1127	17			82	1.0
1409		90		10	0.90298
1411			90	10	0.90298
1413		90	10		0.90298
1414	10			90	0.90298
1426		12	87		0.992554
1427	87	12			0.992554
1428		12		87	0.992554
1430	16	83			0.994516
1431		20		80	0.995493
1435	75			25	0.996473
1446	33	33		33	0.997745
1447	33	33		33	0.997743
1448		33	33	33	0.99774

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain