SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29637

Length: 690 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene29637

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate receptor (Fragment) n=2 Tax=Vitis vinifera RepID=D7UDC6_VITVI	-	-	58%
FL-Next	sp=Glutamate receptor 3.3; Arabidopsis thaliana (Mouse-ear cress).	-	-	61%
Blast2go	glutamate-gated kainate-type ion channel receptor subunit 5	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	calcium ion transmembrane transport	GO:0070588	Biological Process	75%
Blast2go	gravitropism	GO:0009630	Biological Process	75%
Blast2go	calcium channel activity	GO:0005262	Molecular Function	75%
Blast2go	glutamate receptor activity	GO:0008066	Molecular Function	75%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, family 3	IPR000337	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Extracellular solute-binding protein, family 3	IPR001638	-	-
Sma3	Extracellular ligand-binding receptor	IPR001828	-	-
Sma3	GPCR, family 3, gamma-aminobutyric acid receptor, type B	IPR002455	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3		IPR015683	-	-
Sma3	Ionotropic glutamate receptor, plant	IPR017103	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
282	20	80			0.995493
284			20	80	0.995493
286	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain