SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29529

Length: 1073 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene29529

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNase PD2 (Fragment) n=1 Tax=Prunus dulcis RepID=Q9LLS1_PRUDU	-	-	53%
FL-Next	sp=Ribonuclease 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	52%
Blast2go	ribonuclease 1	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	69%
Blast2go	anthocyanin biosynthetic process	GO:0009718	Biological Process	69%
Blast2go	response to wounding	GO:0009611	Biological Process	69%
Blast2go	aging	GO:0007568	Biological Process	69%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	69%
Blast2go	ribonuclease activity	GO:0004540	Molecular Function	69%
Blast2go	cell wall	GO:0005618	Cellular Component	69%
Blast2go	extracellular region	GO:0005576	Cellular Component	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonuclease T2	IPR001568	-	0.0	-
Sma3	Ribonuclease T2, active site	IPR018188	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P42813

Fln msg:

Fln protein: MKTTNAGSIMLVLIIFGCCSTGVIATSFDFYYFVQQWPGSYCDTRRGCCYPRTGRPASEFSIHGLWPNYNTGKWPQFCGSSEEFDYSKISDLEEELNRYWGSLSCPSSDGQEFWGHEWEKHGTCSLNLDEHSYFEKALSLRQNIDILGALKTAGIKPDGNQYSLSDIKEAIKQNTGQLPGIDCNISAEGEHQLYQVYVCVDKSDASTVIECPIYPHSNCPSMVVFPPFGDDQEDRRGYTEEIEEL*

Protein Length: 247

Fln nts: ATTCATGATATAAGATCAGATTCATATGGTATACAGGGAGCCATAGAAAtgacgAgCAAAGTTACTAGCAGGAAATCAAACTAGGTATC_-_ATGAAGACCACCAACGCAGGCTCGATAATGTTGGTGCTCATTATTTTTGGGTGcTGTTCCACTGGGGTCATAGCTACATCTTTTGATTTCTATTACTTCGTTCAACAGTGGCCTGGTTCATACTGCGATACTCGTAGAGGATGCTGTTACCCTCGCACGGGAAGGCCTGCTTCCGAATTTTCCATTCATGGCCTCTGGCCCAACTAtAACACCGGTAAATGGCCACAGTTCTGTGGTTCCTCCGAAGAATTCGACTACTCAAAGATCTCAGATCTGGAGGAGGAGCTGAACAGGTATTGGGGTTCGTTAAGCTGTCCGAGCAGCGATGGACAGGAATTCTGGGGACACGAGTGGGAGAAACATGGCACTTGCTCTCTCAATCTTGATGAGCATTCATACTTTGAGAAGGCTCTCTCCCTGAGACAAAATATAGACATTCTTGGGGCTCTTAAAACTGCAGGTATTAAACCCGATGGAAACCAATACAGTTTGAGCGATATCAAGGAAGCCATTAAGCAAAACACTGGGCAGCTCCCAGGAATCGATTGCAACATAAGCGCAGAGGGAGAACATCAACTATATCAGGTGTATGTGTGTGTGGATAAATCCGATGCTTCCACTGTTATTGAATGCCCCATTTACCCACACAGCAATTGCCCATCCATGGTTGTGTTTCCTCCTTTTGGGGACGATCAGGAGGACCGACGTGGTTACACAGAAGAAATAGAGGAGCTGTAG___ATCTGGAAAAACAGCATTTCTTCTCTCCGCATTTGATTCGTATCAATGAAATTGCCGATTCCAACTTGACATTTTGTAGATTTGATAGCTTCTTAGATTGCAAGGCATGTTTTGAACGATTCAATTCGTAACGTTGTATTTCATTATTTAAACTTTAACGTCGGGGGACCAAGTTTGCTGAAAACGTAAAATGAGAAAACTATTTGCCACTTGCTGAATTATTTTATGATATAGACATGTTAAAGC

Fln Alignment:

AllPineV4_c9649___IMLVLIIFGCCSTGVIATSFDFYYFVQQWPGSYCDTRRGCCYPRTGRPASEFSIHGLWPNYNTGKWPQFCGSSEEFDYSKISDLEEELNRYWGSLSCPSSDGQEFWGHEWEKHGTCSLN-LDEHSYFEKALSLRQNIDILGALKTAGIKPDGNQYSLSDIKEAIKQNTGQLPGIDCNISAEGEHQLYQVYVCVDKSDASTVIECPIYPHSNCPSMVVFPPF
P42813_______________ISLLVILPSVFSASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPNSGKPAADFGIHGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSGSGEAFWEHEWEKHGTCSESVIDQHEYFQTALNLKQKTNLLGALTKAGINPDGKSYSLESIRDSIKESIGFTPWVECNRDGSGNSQLYQVYLCVDRS-GSGLIECPVFPHGKCGAEIEFPSF

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
90	66		33		0.997452
108	25		75		0.996473
143		66		33	0.997452
156	25		75		0.996473
296		75		25	0.996473
356	18	81			0.999994
358		81	18		0.999994
359	81		18		0.999994
479	38		61		1.0
540		16		83	0.994512
682	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain