SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29499

Length: 1139 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene29499

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative MADS box transcription factor PrMADS9 n=1 Tax=Pinus radiata RepID=O24487_PINRA	-	-	89%
FL-Next	tr=Putative MADS box transcription factor PrMADS9; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	96%
Blast2go	mads box transcription factor 9	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, K-box	IPR002487	-	0.0	-
Sma3	Transcription factor, MADS-box	IPR002100	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: O24487

Fln msg:

Fln protein: MVRGKTQMKRIENNTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLYEFASPSMEEILEKYKERSKENDIAQTTKEQDTQYSKHSKQKLANMEEKIRILEATQRKMLGEGLESCSMAELNKLESQGERGLSHIRARKTEILVDQIECLKRKERLLSEENALLSKKWVDRQSVDGSGSTSSSIGLGSIEQIEVETQLVIRPPNAQDHCSVNSGH*

Protein Length: 223

Fln nts: GGTTAGCTCGATGCCTTTATTGATTTTGCCAAGTAAAGACGTCCGTATACGTCTGTATTTAGTACTCGTTTTGCCTTTTTATGGGGGGATTTTCATTCTAAGACTTTTGGTGTTGGGGTTCAAGAGCTTGTCCAGTTTATCATCCGCCATTATTGGGTTTCAATTCGATCTTGATTTTCCAGAGACGATGTGATTGACCATTCTGGGGCAAAAGAGAGAGAGGAGA_-_ATGGTGAGGGGAAAGACCCAGATGAAGAGGATCGAGAACAACACGAGCAGGCAGGTTACGTTTTCTAAGCGCAGGAATGGGTTACTGAAGAAAGCTTATGAGCTCTCGGTGCTGTGCGATGCGGAAGTTGGACTTATAATTTTCTCCCCAAGAGGGAAACTATATGAATTCGCCAGTCCCAGCATGGAGGAGATTTTGGAAAAGTATAAAGAACGTTCGAAGGAAAATGACATAGCTCAGACAACGAAAGAGCAAGATACTCAGTATTCCAAACATTCCAAACAAAAGCTTGCAAATATGGAAGAAAAGATTAGGATTCTTGAAGCAACCCAAAGAAAGATGTTGGGGGAAGGGTTGGAATCGTGTTCAATGGCAGAATTAAATAAGTTAGAGAGCCAAGGTGAACGAGGATTGAGCCATATACGGGCTCGAAAGACGGAAATATTGGTTGACCAAATAGAATGTCTTAAAAGAAAGGAACGTCTGCTAAGCGAGGAGAACGCCTTACTCAGTAAAAAGTGGGTTGATCGTCAATCCGTGGACGGTTCCGGTTCAACATCATCTTCAATTGGGTTGGGAAGCATCGAGCAGATCGAAGTTGAGACGCAGTTGGTTATAAGACCTCCAAATGCACAGGATCACTGTTCTGTAAATAGTGGCCATTGA___AATTATTATTTAAACTGATCCATGTTATCTCAAAATTTACTTTTATTATTATTTCATTATCAAAGCTTTCTATGTGATCGAAATAGGTTGTAGTCCAGCCTCATTGTTTTGGCAAAATTCAGAAAGACGCTCTTATCACTGGATATCGAATTTGATCTAAAAACACAACACCAAGTCTTCCCTTTCATCTAAAAGCACAATAAACTTGCTCGTTCTTATATTTTCTTGAATAATAAAATACAATACG

Fln Alignment:

AllPineV4_c9555___MVRGKTQMKRIENNTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLYEFASPSMEEILEKYKERSKENDIAQTTKEQDTQYSKHSKQKLANMEEKIRILEATQRKMLGEGLESCSMAELNKLESQGERGLSHIRARKTEILVDQIECLKRKERLLSEENALLSKKWVDRQXXXXXXXXXXXXXXXXIEQIEVETQLVIRPPNAQDHCSVNSGH
O24487_______________MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLYEFASPSMEEILEKYKKRSKENGMAQTTKEQDTQYSKHSKQKLANMEEQIRILESTQRKMLGEGLESCSMAELNKLESQAERGLSHIRARKTEILVDQIECLKRKERLLSEENALLSRKWVDRQSVDGSGSTSSSIGLGSIEQIEVETQLVIRPPNAQDHCSVNSGH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain